Gene Information

Name : fliP (CHY_1005)
Accession : YP_359852.1
Strain : Carboxydothermus hydrogenoformans Z-2901
Genome accession: NC_007503
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 887013 - 887777 bp
Length : 765 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
GTGGCGGCAAAAAATAAAAAGCTTTTAATAACGGGAATTTTATTGATATTAACTCTGGGGGTAAGTTCATTAGCGCTTGC
GGAACCGCTTACCATACCCAATATCCAGCTTAATATTAACGGGCAGGGTTCGCCCCAGGAAGTGGTTAACTCCGTCAAGC
TTTTGGTGCTGTTAACCGTTTTAGCTTTGGTACCTGCCTTTTTACTTTTGATGACTTCCTTTACCCGCATTGTGGTGGTT
TTATCGCTGTTAAGGAATGCCATGGGTACCCAGCAAGCGCCACCCAATCAGGTTTTAATTGGCCTTGCTTTGTTTTTAAC
CATTTTTATCATGTCGCCGGTAATTAATAAAATTAACCAGGATGCCATCCAACCCTACTTAAATAATCAAATTACCCAGG
AGCAGGCTATCCGGGCGGCTGAAGCGCCGCTGAAGGATTTCATGCTGAAACAAACCCGGGAAAAAGACCTGGCCCTTTTT
ATTGAATTGGCCAAATTGCCGCGGCCGCAAACCAAAGACGACGTACCTTTTACCGTAGTGGTTCCGGCTTTTATCATCAG
CGAACTAAAAACGGCATTTCAGATGGGATTTATGTTGTTTCTACCGTTTTTGATTATTGACATGGTTGTTGCCAGTATTT
TAATGTCCATGGGCATGTTCATGATTCCGCCGATGCTCGTAGCTTTACCCTTTAAACTTTTACTTTTTGTTCTTGCCGAT
GGTTGGTACCTGGTGGTCAAGAGTTTGGTAAGCAGTTTTTCTTAA

Protein sequence :
MAAKNKKLLITGILLILTLGVSSLALAEPLTIPNIQLNINGQGSPQEVVNSVKLLVLLTVLALVPAFLLLMTSFTRIVVV
LSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQPYLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALF
IELAKLPRPQTKDDVPFTVVVPAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLAD
GWYLVVKSLVSSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-33 46
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-33 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-33 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-33 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-33 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-33 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-32 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-32 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-31 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-31 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-31 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_359852.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-52 60
fliP YP_359852.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-53 60
fliP YP_359852.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-54 60
fliP YP_359852.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-57 56
fliP YP_359852.1 flagellar biosynthesis protein FliP VFG0519 Protein 8e-32 41