Gene Information

Name : Pcar_0542 (Pcar_0542)
Accession : YP_006716233.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 655765 - 656757 bp
Length : 993 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAACAAGTCAAAATTCAGACCAAATCCTGAGCTAAAACTCATGGATCAAGTTCGCGAGGTCTTGCGTTACCATCA
TTATGCCTACCGAACCGAGCAAACCTATTGCGACTGGATTGTGCGCTATATCCGGTTCTTTGGGGCGAAATACCACCCCT
GCGATATGGGCAAAAAAGAGATCGAGGCTTTTTTGAGCCACCTGGCAACGGATTGCAAAGTCTCGGCAAACACTCAACGT
CAAGCACTGAACGCTATCGTGTTTTTATACAGACAAGTTCTTGACCAACCGGTGGATGAGCTCATCGAGCATATAAAAGC
CAGAAAAAACCGACGTCCACAGGTTGTGCTAAGCCAAAGCGAAGTTCAACAGGTGCTGGCCCGGATGACAGGGACGCATC
TGTTAATGGCTCAGCTTCTGTACGGTGGCGGTCTGCGATGGATGGAATGTATCCGATTACGCGTGCAGGATCTTGATTTC
GAAAGGGATTTGATCTACGTGAGGGATGGTAAAGGCGGGAAAGATCGAACCACGACCTTTCCAGCTTCGATAAAGAATGG
CTTACAGACGCATGTCGACAGAATTGGGCAACTCCACGAACAGGATCTGGCCAAAGGATACGGAAGCGTCTATCTGCCCA
ATGCACTTGACATAAAATACCCAAATGCGGAAAAAGAATTCGCCTGGCAGTATGTTTTCCCAAGCAAACGCCTGAGCACA
GATCCACGTTCCGGCAAGATTCGCCGCCATCATGTCCTTGAGTCCGGCTTGCAAAAGGCGGTAAAGGTTGCGGTAAACCG
TGCCGGAATCCATAAAAGAGTCGGCTGTCATACCTTTCGCCATTCGTTCGCGACCCACTTGCTGGAAAACGGTGTGAATA
TCCGCGTGGTGCAGGAACTGATGGGGCATGCCGACGTCAAAACCACCGAGATTTACACCCATGTCATGGCCAAAAATATT
GATGCTGTGACCAGCCCGCTCGATGTGCTATAG

Protein sequence : 
MKNKSKFRPNPELKLMDQVREVLRYHHYAYRTEQTYCDWIVRYIRFFGAKYHPCDMGKKEIEAFLSHLATDCKVSANTQR
QALNAIVFLYRQVLDQPVDELIEHIKARKNRRPQVVLSQSEVQQVLARMTGTHLLMAQLLYGGGLRWMECIRLRVQDLDF
ERDLIYVRDGKGGKDRTTTFPASIKNGLQTHVDRIGQLHEQDLAKGYGSVYLPNALDIKYPNAEKEFAWQYVFPSKRLST
DPRSGKIRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKNI
DAVTSPLDVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 7e-63 48
intI YP_001844881.1 integrase Not tested AbaR20 Protein 9e-63 48
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 9e-63 48
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 9e-63 48
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 9e-63 48
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-62 48
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 7e-63 48
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-62 48
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-62 48
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 7e-63 48
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 7e-63 48
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-43 48
int1 YP_005160012.1 integrase Not tested Not named Protein 6e-49 48
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-63 47
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-62 47
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-62 47
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-62 47
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-62 47
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-62 47
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-62 47
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-62 47
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-62 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pcar_0542 YP_006716233.1 integron integrase VFG1028 Protein 2e-63 47