Gene Information

Name : Pcar_0498 (Pcar_0498)
Accession : YP_006716176.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 606418 - 607773 bp
Length : 1356 bp
Strand : +
Note : 'domains: REC, sigma54 interaction'

DNA sequence : 
ATGGAAGAGAAAAAACAGCGCCTGTTGTTGGTAGATGACGACACCGATCTGTTGCGGCTATTGTCCATTCGCCTGCGCGG
TGCCGGATACGAGGTCAACATCGCGGAAAGCGGCGAGGAAGCCCTGGCCAAGATTCCGGCCGTGCGCCCCCATCTGGTGA
TTACCGATCTACGCATGGCGGGCATGGATGGCATGGCGTTGTTCGACGCCATTCGCACCCGCCAGGGTTCCTTGCCGGTT
ATCATTCTGACGGCCCATGGCTCCATCCCCGATGCCGTCGAAGCGACCCGTCGGGGGGTGTTCAGCTTTCTCACCAAGCC
TTTGGACAGTAAGGCCCTGCTGGAGGAGATTCAGCGTGCGTTGCGCATAGCCGGCGGTTCCGCCGAACAGGAATCTTCGG
AGGGGATGTCCTGGCGCAGCGAAATCATTACCAAAAGCCCGACGATGGAAGATCTGCTGGCCAAGGCGCGGCTGGCTGCC
GAGAGTGATGCCGCGGTTTTGATCCGCGGAGAGAGCGGCACCGGCAAGGAATTGATTGCGCGTGCCATTCATCGGGCCAG
CGCCCGCGCCGACAAACCCTTTGTCGCCGTCAACTGCGGCGCCATACCCGATACGCTGCTCGAATCGGAACTGTTCGGCC
ATACCAAAGGGGCTTTTACCGGTGCCATGAAGGATTACCCCGGTCTGTTCCGTTCCGCCGAAGGGGGCACCCTGTTTCTC
GACGAAATCGGGGATATGCCTCTGCCGTTGCAGGTCAAGTTGTTGCGCGTCCTGCAGGAGAAGCAGATGCGGCCGGTCGG
CTCGGTCGCTACCTGTGCCGTCGATGTGCGGATCATTTCCGCCACGCATCGCCATCTCGAAGAGGAGATCAGTGCCGACC
GGTTTCGCGAGGATCTTTATTATCGCCTCAATGTCGTCTCCCTCGACTTGCCGAGCCTGGCCGAGCGACGTGAAGATATC
CCCTTGCTGGCCAACCATTTTTTGCAGAAATTCGCCGCGCGGAGCGGTAAAAAAGTTACCGGGTTTGCACCCGAGGCCAT
GGAAGCCCTGTTGTCGGCGTCCTGGCCGGGCAATGTGCGCCAGCTGATCAACGTGGTCGAGCAGGGATTGGCCCTGACCA
CGACCTCCCTGATTTCGGCTTCGCTGGTTGCGGATGCCATTCACGAAAATATCGAAAGCATTCCCCCCTTCAGCGAGGCG
CGACGCCAGTTCGAGCAGGACTACCTGGTGCGCCTGATGCAGCTTACCCGTGGCAATGTCGCCCATGCCGCGCGGCTGGC
CGGCCGCAACCGTACGGAATTCTATAAATTGCTCGGTCGCCACCACATCGTGCCGAGTCTGTTTAAAAATGTCTAA

Protein sequence : 
MEEKKQRLLLVDDDTDLLRLLSIRLRGAGYEVNIAESGEEALAKIPAVRPHLVITDLRMAGMDGMALFDAIRTRQGSLPV
IILTAHGSIPDAVEATRRGVFSFLTKPLDSKALLEEIQRALRIAGGSAEQESSEGMSWRSEIITKSPTMEDLLAKARLAA
ESDAAVLIRGESGTGKELIARAIHRASARADKPFVAVNCGAIPDTLLESELFGHTKGAFTGAMKDYPGLFRSAEGGTLFL
DEIGDMPLPLQVKLLRVLQEKQMRPVGSVATCAVDVRIISATHRHLEEEISADRFREDLYYRLNVVSLDLPSLAERREDI
PLLANHFLQKFAARSGKKVTGFAPEAMEALLSASWPGNVRQLINVVEQGLALTTTSLISASLVADAIHENIESIPPFSEA
RRQFEQDYLVRLMQLTRGNVAHAARLAGRNRTEFYKLLGRHHIVPSLFKNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-56 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-56 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pcar_0498 YP_006716176.1 sigma-54-dependent transcriptional response regulator BAC0467 Protein 7e-82 47
Pcar_0498 YP_006716176.1 sigma-54-dependent transcriptional response regulator BAC0089 Protein 2e-78 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pcar_0498 YP_006716176.1 sigma-54-dependent transcriptional response regulator VFG1214 Protein 1e-65 47
Pcar_0498 YP_006716176.1 sigma-54-dependent transcriptional response regulator VFG1249 Protein 6e-65 46
Pcar_0498 YP_006716176.1 sigma-54-dependent transcriptional response regulator VFG0116 Protein 5e-55 43