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Name : tssC (Pcar_2815) Accession : YP_006718593.1 Strain : Pelobacter carbinolicus DSM 2380 Genome accession: NC_007498 Putative virulence/resistance : Virulence Product : type VI secretion system needle sheath protein TssC Function : - COG functional category : - COG ID : - EC number : - Position : 3284548 - 3286089 bp Length : 1542 bp Strand : + Note : - DNA sequence : ATGAACATGCAGAATACGGCACCGAGCAAAAGCAAACCTCAAGAAGAAGTCCTTCTTGACAACGAGAACTCCTACGAACG TTTATGCGAGCTGGTCGACATCGCTCCCCTGAACGAATCGATCAAACTGAACAGCTTTGCCGACGCGTCCCGAATGGCGG ATATTTCCCTGCAGGAACGGCTGACGGCCGGCATCCAGGTGTTTCTCGACCTGGCAACCCGGAACAATTCCCAGATCGAA CGGATCGACAAAACCCTGCTCGACCAGTACATCGCCCAGATCGATCAGACCATCGGCAATCAACTGGATGTCATTCTTCA CCACCTGGATTTTCAGAAGATGGAGAGTGCCTGGCGCGGCCTTCAATTCATGGTCGACCGCTGTGACTTCCGCTGCAACA CCAAAGTGGAAATCCTCGACTGCTCCAAGGAGGATCTGCTGGAGGACTTCGAGGAAGCCCCCGAAATCATCCAGACCGGT CTCTACAAGCATGTCTATGTCAGCGAATACGACACGCCCGGCGGTCAGCCCTTTTCCAACATTGTCGCGAACTTCGAATT CGACAGCTCGGCCCAGGACGTCACCCTGCTGCGCGAAGCCTCCAAGGTTTCGGCCAGTGCCCACTGCCCCTTCCTGGCGT CGGTCGGTTCGAAATTTTTCGGCAAATCCAGCGTCGAGGAAATCGCCAAGATCAACGACCTGTCCAACTACATGGAAAAG GCCGAGTTCACCCGCTGGAGAAGCTTCCGCGAAACGGAAGACAGCCGCTACGTGGGTCTGCTGACTCCCCGATTCCTGCT GCGCCTGCCCTACGGCCAGGACACCATTCCGGTCCGCACCTTCAATTATGAAGAAAACGTCAGCGCCGAGGACCACCGCA GCTATCTGTTCGGCAACCCGGTCTTCGCCTTCGCCGGCAACATCGCCCAGAGCTTCGCCAAACACGGCTGGGCCGTCAAC ATCCGCGGTCCGGAAGCCGGAGGGAAAGTTGAAAATCTGCCGGTGCACCTGCACGACAGCGGGAAGGGCATGCAGATCAA GATGCCCACGGAAATGCTGGTTTCCGAAACCCGCGAACTGGAAATGGCCAACCTCGGCTTCATCCCCCTGAGCTATTACA AAAACAGCGACTTCGCCTGCTTTTTCTCCGCCAACTCGGTGCAGAAACCGAGCGAGTACGCCAACACCGAGGCCAACGCC AACAGCATGATCAACGCGCGGCTGCCCTACATCTTCCTGGTGTCGCGGCTCGCTCATTATCTCAAGGTCCTGCAGCGGGA AAACATCGGCTCGTCCAAGAGCCGCCAGAAACTGGAAAACGAACTGAACGCCTGGATCCAGACCCTGGTGACGAAAATGA AGGACCCCGAGCCGGAACTGATCGCCACCCACCCCCTGCGGGACGGCCAGGTAACGGTGCGGGAAATCCCGGAAAACCCG GGCTACTACAGCGTCGACCTGTTTGTCCGGCCGCATTTCCAGATCGAGGGGGTGGACGTGCAGTTGAAACTCGTGGCGCA GATGCCGCGGGATAATAAATAA Protein sequence : MNMQNTAPSKSKPQEEVLLDNENSYERLCELVDIAPLNESIKLNSFADASRMADISLQERLTAGIQVFLDLATRNNSQIE RIDKTLLDQYIAQIDQTIGNQLDVILHHLDFQKMESAWRGLQFMVDRCDFRCNTKVEILDCSKEDLLEDFEEAPEIIQTG LYKHVYVSEYDTPGGQPFSNIVANFEFDSSAQDVTLLREASKVSASAHCPFLASVGSKFFGKSSVEEIAKINDLSNYMEK AEFTRWRSFRETEDSRYVGLLTPRFLLRLPYGQDTIPVRTFNYEENVSAEDHRSYLFGNPVFAFAGNIAQSFAKHGWAVN IRGPEAGGKVENLPVHLHDSGKGMQIKMPTEMLVSETRELEMANLGFIPLSYYKNSDFACFFSANSVQKPSEYANTEANA NSMINARLPYIFLVSRLAHYLKVLQRENIGSSKSRQKLENELNAWIQTLVTKMKDPEPELIATHPLRDGQVTVREIPENP GYYSVDLFVRPHFQIEGVDVQLKLVAQMPRDNK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 6e-102 | 47 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 5e-102 | 47 |
| HH0247 | NP_859778.1 | hypothetical protein | Not tested | HHGI1 | Protein | 4e-99 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssC | YP_006718593.1 | type VI secretion system needle sheath protein TssC | VFG2093 | Protein | 5e-111 | 49 |
| tssC | YP_006718593.1 | type VI secretion system needle sheath protein TssC | VFG2475 | Protein | 1e-107 | 48 |
