Gene Information

Name : pilR (Pcar_2145)
Accession : YP_006717895.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2496138 - 2497616 bp
Length : 1479 bp
Strand : -
Note : 'domains: REC, sigma54 interaction, HTH8'

DNA sequence : 
TTGTCATGTCGCGGGGAAGAACAAAAAAGGATAGTTATTCCATTGAAAAAGTCGGCTATGGAAAATAGACAGGAAAATCA
GCATCGCATTCTCGTAGTTGATGATGAAGAGAGTATGCGAGAATTCCTATGCATTCTCCTGAAGAGGGACGGATATCTTG
TTGATGCTGTAAGTGATGGTCAACAGGCAGTTGCATGCCTTAAAGAGCAAAACTACGACCTTATTATCAGTGACATTAAA
ATGCCGAGGTTGGATGGGTTTGGATTGTTGGATCATGTTAAGGAACGATTTGCAAGTACGGCCATGATTATGATCACGGC
ATTTTCAACCGCGGAGCAGGCTGTCGATGCCATGAAAAAGGGCGCGTACGATTATATAACCAAACCTTTTAAAAACGAAG
AAATTCGTCTGGTGGTTGAAAATGCCCTGGAGCGTATGGATTTGCGCCGGGAAAACCTGCAACTCAAAAAAGAACTGGGC
CAGCGTTTCTCCTTTGCTAATATTATCGGCAAAAGCAAAGTCATGCAGGGGGTTTATGACCTGATTGAAAAGGTATCCGC
GAGTAAGGTCAACGTTCTTATTACCGGAGAGAGCGGTACCGGCAAGGAATTGGTCGCTCGCGCGATTCACTACAATAGCG
ATAGGCACGATCGGCCTTTTGTAGCCATATATTGCGGGGCCATTCCAGAAAACTTATTGGAGAGTGAACTTTTTGGTCAT
GAAAAAGGCGCCTTTACCGGTGCGGTGCAACAGAAGCAAGGCTTGTTCGAAGTGGCAGACGGGGGGACTCTGTTTCTTGA
TGAAATCGCCGAATTGCCTCCTATGATGCAGGTGAAATTGCTGCGGGTTATTCAGGAACATGAATTTCGCAAGGTTGGCG
GCACCCGGGATCTCAAAGTCGACGTACGCCTGGTGGCGGCTACCAATAAAGACCTGGCGCAGGCGGTAACCGAAGACCAA
TTTCGAGAAGATCTGTATTACCGGCTCAACGTTATTCAGGTTGGATTGCCCCCATTGCGGGACCGCCGGGAAGATATTCC
TCTGCTGGTTAGTCATTTTCTGCAAAAGTTAACCCCCGGTTTTAGTACAACGATTCCTGACGGCGTGATGCGGCGATTTC
TCGATTATCACTGGCCGGGCAATATACGCGAACTTGAAAATACCGTGGAGCGTTGTGTCGTTCTTGGCGGCAAGGGAGAA
ATCACCGAGGATAGTCTGCCGCCCCATATGCTTTGTATAAGCGGGACAGGAGATCAGCAACTTACGGAGTTGCCGGAGGA
GGGGCTTGATCTCGATGATTATTTAGGGGCTATTGAAAAGGATATCCTCCTCAAGGCTCTGGATCGGACTGGCGGGGTGC
GCAAGCGGGCCGCCGAACTTCTCCATATCACCTTCCGCTCCATACGCTATCGTTTGGCAAAATTCGGGATTGAGGCCGAA
GGTGGGGACGAACGATCTGGGCTCGGGTGTGACAAATAA

Protein sequence : 
MSCRGEEQKRIVIPLKKSAMENRQENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIK
MPRLDGFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDLRRENLQLKKELG
QRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGH
EKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQ
FREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFSTTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGE
ITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAKFGIEAE
GGDERSGLGCDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 8e-78 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 8e-78 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_006717895.1 sigma-54-dependent transcriptional response regulator PilR BAC0089 Protein 3e-98 49
pilR YP_006717895.1 sigma-54-dependent transcriptional response regulator PilR BAC0467 Protein 2e-85 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_006717895.1 sigma-54-dependent transcriptional response regulator PilR VFG1214 Protein 8e-85 43
pilR YP_006717895.1 sigma-54-dependent transcriptional response regulator PilR VFG0116 Protein 5e-63 42