Gene Information

Name : colR (Pcar_1726)
Accession : YP_006717457.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Virulence
Product : winged-helix transcriptional response regulator ColR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2019757 - 2020440 bp
Length : 684 bp
Strand : -
Note : 'domains: REC, trans_reg_C'

DNA sequence : 
ATGCGAATCTTAATTGTAGAAGATCAGGAGGACATCCTTCAGAACATCGCAGATTATCTTCATCTGCACGGTTTTACGGT
GGATTGCGCCCAAAACGGGCTCGGCGGTCTGCATTTAGCGGTCACGCTCGAATTCGACCTGATCATCCTCGATATCATGC
TTCCCGGCATGGACGGTTTGACACTCTGTCGGAAACTTCGCAAGGAGGCGGGGGTGCAGACTCCGGTGATCTTTTTGACG
GCGCGGGACAAGCTTGAGGACAAATTAGCCGGCTTCAAAGCCGGGTCGGACGACTATCTGGTCAAGCCTTTTTCTTTGCC
GGAACTGCATGCTCGGGTGGAAGCGGTGCTGCGCCGCAGCCAGCCTGTTCAGAGCAACCGATTGCAGGTCGCCGATCTGG
TTTTCGACCTGGATACCTTGGAGATCACCCGGCAGGGCAAGAGCCTCAGGCTTAATCCTATCGGCCTGAAACTGCTCGAA
AAACTGATGAAATGCAGCCCCAATGTGGTCCGGCGCGAGACGCTCCAGGACATCTTGTGGGGTGACGATGTTCCCGATAG
CGATAGCCTGCGAAGTCATATTCATTTACTGCGCCAGACCATCGACAAGCCCTTTGCCACGCCGCTGATCCATACGATTC
ACGGCATAGGCTATTGCCTTAAAGCAGAAGACCATGCAATTTAA

Protein sequence : 
MRILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIMLPGMDGLTLCRKLRKEAGVQTPVIFLT
ARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRRSQPVQSNRLQVADLVFDLDTLEITRQGKSLRLNPIGLKLLE
KLMKCSPNVVRRETLQDILWGDDVPDSDSLRSHIHLLRQTIDKPFATPLIHTIHGIGYCLKAEDHAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-34 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_006717457.1 winged-helix transcriptional response regulator ColR BAC0197 Protein 4e-37 43
colR YP_006717457.1 winged-helix transcriptional response regulator ColR BAC0125 Protein 4e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
colR YP_006717457.1 winged-helix transcriptional response regulator ColR VFG0596 Protein 7e-35 42