Gene Information

Name : Pcar_1377 (Pcar_1377)
Accession : YP_006717099.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1615835 - 1616836 bp
Length : 1002 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAACAAGCAAAAGTTCCATCCAAATCCTGAACTGAAACTCATGGACCAGGTCCGTGAGGTGCTGCGATATCACCA
CTATGCCTACCGAACTGAACAGAATTATTGCCAGTGGATCGTTCGCTTCATCAGGTTTTTCGATGCGAAGATCCATCCCA
AGGATATGGGCAAAGGGGAAATCGAATCCTTTTTGAGTCATTTGGCAACCGAGGGAAATGTATCCGCCGCAACGCAGCGA
CAGGCATTAAATGCCATTATATTTCTTTACAAGAGGGTACTTGATCAACCGGTTGACGAAATACTTGAACACATTAGAGC
CAAAAGGAAACGGCGACCACCGATCGTTTTAAGCCAGGGGGAGGTCCAAAAGGTACTCAATCAAATGACGGGCACACATT
TGCTGATGACCCAACTGTTATATGGCGGGGGATTGCGATTAATGGAATGCATACGATTACGCATTCAGGGTCTCGATTTT
GAAAGGAACCTTATCTATCTTCGCGATGGCAAGGGCGGAAAGGATCGCACAACCATTTTTCCCGCCTCCATGAAAAGAGC
ATTGCAAAAACACGTCGAGAAGGTCAAACAGCTGCATGAACAGGACCTGGCTGATGGTTACGGTACAGTTTTTCTCCCCC
ATGCCCTGGCAAAAAAATACCCTAAAGCACCACAGGAGTTTGGCTGGCAATATCTCTTCCCGGCCAGAGGGCGTAGCACC
GATCCACGCTCCGGCAAGATTCGCCGCCATCATGTCCTTGAGTCCGGCTTGCAAAAGGCGGTAAAGGTTGCGGTAAACCG
TGCCGGAATCCATAAAAGAGTCGGCTGTCATACCTTTCGCCATTCGTTCGCGACCCACTTGCTGGAAAACGGTGTGAATA
TCCGCGTGGTGCAGGAACTGATGGGGCATGCCGACGTCAAAACCACTGAGATTTACACCCATGTCATGGCCAAGGATATC
AATGCGGTGGCCAGCCCTCTGGATTCCCTTGAAAAACCGTAA

Protein sequence : 
MKNKQKFHPNPELKLMDQVREVLRYHHYAYRTEQNYCQWIVRFIRFFDAKIHPKDMGKGEIESFLSHLATEGNVSAATQR
QALNAIIFLYKRVLDQPVDEILEHIRAKRKRRPPIVLSQGEVQKVLNQMTGTHLLMTQLLYGGGLRLMECIRLRIQGLDF
ERNLIYLRDGKGGKDRTTIFPASMKRALQKHVEKVKQLHEQDLADGYGTVFLPHALAKKYPKAPQEFGWQYLFPARGRST
DPRSGKIRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKDI
NAVASPLDSLEKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-70 46
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 5e-70 46
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-70 46
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 5e-70 46
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-70 46
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 5e-70 46
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-70 46
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 5e-70 46
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-70 46
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 5e-70 46
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 2e-70 46
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-70 46
intI1 AAK02045.1 integrase Not tested SGI1 Protein 5e-70 46
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 2e-70 46
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 2e-70 46
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 5e-70 46
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-70 46
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 2e-70 46
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 5e-70 46
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-70 46
int1 YP_005160012.1 integrase Not tested Not named Protein 2e-57 46
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-52 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pcar_1377 YP_006717099.1 integron integrase VFG1028 Protein 2e-70 46