Gene Information

Name : join (Pcar_1347)
Accession : YP_006717068.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Unknown
Product : transposase of ISPca2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1576756 - 1577903 bp
Length : 1148 bp
Strand : -
Note : -

DNA sequence :
ATGAGCAGCAAACGTTACACCGAAGAGTTCAAGATCGAAGCCGTCAAGCAAGTCACGGAATGCGGCTATTCCGCTTCCGA
AGTTGCCCGGCGTTTGGGTGTGAATGCCCACAGCCTTTACGCCTGGATCAAAAAATACAGCCAAGGCCCGACCCATGCGG
CTAAGGTCGATGACCAGCAGGCTGAGATCAACCGCCTTCGCAAGGAGCTCAAGCGCGTCACCGAAGAACGAGACATCCTA
AAAAAGGCCACCGCGTACTTCGCCAAAGAGTCCCAGTGAGGTACGCCTTCATCCGGGCGCATCAAGAACAGTTTCCCTTG
CGCACCCTTTGCCGCATGATGAGCGTCCATCGCAGCGGTTACTATGCCTGGAGCAAACAGCCCAAGTCCCCTCGGCAAAA
GGAGGACAAGCGACTTACGGGACTCATCAAGCAAGCCTGGCTGGAAAGTGGCTGCATCTACGGTTATCGCAAAATCCATG
ACGACCTTCGGGAACTCGGGGAAACCTGTGGCCGGAATCGGGTAGCCCGCATCATGAAGCAGGCCGGCATCAAGGCCCAG
GTCGGATACCGCAAGCCGCGCCCCCAAAACGGCAAAGTCTCTGTTTTGGCCGACAATCACCTCAACCAGAACTTCGAGGC
CGGGAAGCCAAATCAGGTTTGGGTTACAGATATCACCTATATCCGCACCTACGAAGGCTGGCTGTTTCTGGCCGTCGTGA
TCGACCTGTTCAACCGCCAGGTCGTGGGCTGGTCCATGCAGCCACAGATGCATGCCGATCTGGCGCTGAAGGCTCTGCTA
ATGGCTATGTGGCGACGCAAACCGGAGAACGAGGTCCTGATTCACTCGGACCAAGGCACCCAGTACACCAGCGGCGACTG
GCAGAGTTTTTTGAAAGCACACAGGCTGGTTTGCAGCATGAGCCGGCGCGGCAACTGCTACGACAATGCGGTAGCCGAGA
GTTTCTTCCAGTTACTAAAACGCGAACGGATCAAACGCAGAATCTACAAAACCCGTGAGGACGCCCGCCGGGATGTCTTC
GACTACATAGAAATGTTTTACAACCCGGTCCGCCGCCACGGCAACAACGGCAACCTCTCCCCGGTCGAATTCGAGAGGCA
GTATTTTCAGCAGGCCAAGAGTGTCTAA

Protein sequence :
MSSKRYTEEFKIEAVKQVTECGYSASEVARRLGVNAHSLYAWIKKYSQGPTHAAKVDDQQAEINRLRKELKRVTEERDIL
KKGHRVLRQRVPVRYAFIRAHQEQFPLRTLCRMMSVHRSGYYAWSKQPKSPRQKEDKRLTGLIKQAWLESGCIYGYRKIH
DDLRELGETCGRNRVARIMKQAGIKAQVGYRKPRPQNGKVSVLADNHLNQNFEAGKPNQVWVTDITYIRTYEGWLFLAVV
IDLFNRQVVGWSMQPQMHADLALKALLMAMWRRKPENEVLIHSDQGTQYTSGDWQSFLKAHRLVCSMSRRGNCYDNAVAE
SFFQLLKRERIKRRIYKTREDARRDVFDYIEMFYNPVRRHGNNGNLSPVEFERQYFQQAKSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-43 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-42 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 4e-43 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-45 44
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-39 41
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-38 41
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-38 41
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-38 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-38 41
unnamed AAF09022.1 unknown Not tested SHI-O Protein 5e-39 41
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-38 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
join YP_006717068.1 transposase of ISPca2 VFG1631 Protein 7e-46 44
join YP_006717068.1 transposase of ISPca2 VFG1706 Protein 1e-38 41