Gene Information

Name : fliP (Pcar_1166)
Accession : YP_006716878.1
Strain : Pelobacter carbinolicus DSM 2380
Genome accession: NC_007498
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1362441 - 1363187 bp
Length : 747 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATCGGCCTCCGGCATCGTGCTGATGCTGCTGATAGTGCTGCCGGCCAGCGTTATGGCAGAGCCCGTCCCGGCCAT
TACCATCGGTCTGGGACAGGCCGGCGGGCAGGCGCCGCCGTCGACCCTGATGCAGATTCTGCTGATCATGACGGTTTTGT
CGGTCGCCCCGGCCATCCTGTTGATGACCACAGCCTTTATCCGCCTTGCCGTGGTTTTATCCTTTCTGCGCCAGGCCATG
GGCACCCAGCAGATGCCGCCGAATCAGGTCATCATCGGCCTGTCGCTGTTTCTGACCTTTTTCGTCATGTCGCCGGTCTT
CAACCAAATAAACGACCAGGCCGTGCAACCTTACCTGACGCAAAAAATCGACCAGAAACAAGCGCTCACCCTGGCGGTGG
AACCGATGCGCCAGTTCATGTTTTCCCAGACCACAGAAAGCGAATTGAGCTTGCTGATGGAGATCAGCGGCCATCCGGAC
CCTGCCGGCAAAGAGGACGTGCCGACTCTGACGCTGATTCCGGCCTTTATGCTGTCTGAACTCAAACGTGCCTTCCAGAT
CGGCTTCATGATCTATATTCCGTTTCTGGTCATCGACATGATCGTCGCCTCGGTGCTCATGTCCATGGGCATGATGATGC
TGCCGCCCATTATCATTTCGCTGCCGTTCAAGCTTCTGCTGTTCGTGCTGGTCGATGGCTGGACCTTGATCGTCGGCTCC
CTGGTTCAGAGTTTCCATATGTTTTAA

Protein sequence : 
MKSASGIVLMLLIVLPASVMAEPVPAITIGLGQAGGQAPPSTLMQILLIMTVLSVAPAILLMTTAFIRLAVVLSFLRQAM
GTQQMPPNQVIIGLSLFLTFFVMSPVFNQINDQAVQPYLTQKIDQKQALTLAVEPMRQFMFSQTTESELSLLMEISGHPD
PAGKEDVPTLTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFKLLLFVLVDGWTLIVGS
LVQSFHMF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-32 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-33 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-35 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-36 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-36 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-36 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-25 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-25 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-25 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-33 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-25 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-31 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-31 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-31 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-51 55
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-57 55
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-57 53
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-51 53
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-35 43
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-32 43
fliP YP_006716878.1 flagellar biosynthesis protein FliP VFG0519 Protein 3e-36 42