Gene Information

Name : RSP_3430 (RSP_3430)
Accession : REF_jgi:RSP_3430
Strain :
Genome accession: NC_007494
Putative virulence/resistance : Virulence
Product : transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 501297 - 501959 bp
Length : 663 bp
Strand : +
Note : IMG reference gene:2512956941; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGCGGATTCTGATCGTCGAGGATGATCCGGTGCTGGCGGACGGGCTGCAGGTGGGCCTCCGGCTGGCGGGCTTCGTGCC
CGAAGCGGTGGGCACGCTGGAGGATGCGCGCGCGGCGCTGGATGCCGGCCGGTTCGAGGCGATGGTGCTCGACCTGATGC
TGCCCGACGGCTCGGGGCTCGAGCTTCTCGCCGAGCTTCGGGCCGCGCGCGAGGCGGTGCCGGTGCTGGTGCTGACGGCG
CGCGACCGGCTCGACGACCGGGTGCGGGGGCTGGATCTCGGCGCGGACGACTATCTTGGCAAGCCCTTCGAGCTAGAGGA
GCTGGCGGCCCGCCTGCGCGCCCTCGGCCGCCGCCCCGCGGCGCTGGCCACCACCCGGCCCGAATGGAACGGCGTGGCCC
TCGACCTCGCGGCGATGGAGGCCTCGCGCGATGGCCGGCCCGTGGCGCTCTCGCCGCGGGAGTTCGCGGTCCTCCGCGCC
CTCATGGCCCACCCCCGCGCGATCCTGAGCAAGGCCCAGATCGAGGAGCAGCTCTACGGCTGGCAGGAGGAGATCGAGAG
CAACGCGATCGAGGTCCATGTCCACAAGCTGCGTGCCAAGCTCGGGCACGGCTTCATCGAGACGGTGCGCGGCGTGGGCT
ATCGGCTGGCGGAGGCCTCGTGA

Protein sequence : 
MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGLELLAELRAAREAVPVLVLTA
RDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPAALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRA
LMAHPRAILSKAQIEEQLYGWQEEIESNAIEVHVHKLRAKLGHGFIETVRGVGYRLAEAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-16 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family BAC0487 Protein 2e-20 43
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family BAC0083 Protein 2e-14 42
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 9e-13 42
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family U82965.2.orf14.gene. Protein 4e-15 42
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family Y16952.3.orf35.gene. Protein 8e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family VFG0473 Protein 2e-24 44
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family VFG1389 Protein 1e-09 43
RSP_3430 REF_jgi:RSP_3430 transcriptional regulator, winged helix family VFG1390 Protein 1e-15 41