Gene Information

Name : RSP_3413 (RSP_3413)
Accession : REF_jgi:RSP_3413
Strain :
Genome accession: NC_007494
Putative virulence/resistance : Virulence
Product : ABC Fe+3-siderophore transporter, ATPase subunit
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.34
Position : 479519 - 480319 bp
Length : 801 bp
Strand : -
Note : IMG reference gene:2512956923; PFAM: ABC transporter

DNA sequence :
ATGACCGACAATGCGCTGGTGGTCAGCGAGCTTGCCGCTGGCTACGGCGACCGGCAAGTGCTGCGCGGGCTCGATCTCGC
GGTGGCGCCCGGCCGGATCACCGCCATCGTCGGCGCGAATGCCTGCGGCAAGTCCACACTACTGCGGACGCTGTCGCGGC
TCCTTTCGCCCGCCGAGGGGCAGGTGCTGCTCGACGGCCGCTCGGTCCATCGCATCCCCCCGCGCGAGCTTGCCCGCCGG
ATGGGGCTCCTGCCGCAGTCGCCGCTGGCGCCCGACGGCATCACCGTGCTCGATCTGGTGAGCCGCGGCCGCCACCCGCA
TCAGGGGCTCTTCTCGCGCTGGAGCGCCGCCGACGATGCGGCGGTGGCCGCCGCGCTCGAGGCGACGGGCACCATGGATC
TGGCCGAGCGCGCGGTGGACGAGTTGTCGGGCGGGCAGCGCCAGCGGGTCTGGATCGCCGTCGCGCTGGCGCAGGAGACG
GGGATCCTGCTCCTCGACGAGCCCACCACCTTTCTCGACATCGCCCATCAGGTCGAGGTGCTGGACCTGCTCACCGATCT
GAACCGCGCGCAGGGGACCACCATCGTCATGGTGCTGCACGACCTGAACCTCGCCGCCCGCTATGCCGACGCGCTGGTGG
CGATGGCCGGGGGCCGCATCCATGCCAGCGGTCCGCCCGAGACGGTCCTGACCGAAGAGATGGTGCAGGCGGTCTTCGGG
CTGCCCTGCCGGACGCTCCCCGATCCGGTGAGCGGCCGGCCCATGATGCTGCCGATCGGCCGCCACCGCGCCGGCGGCTG
A

Protein sequence :
MTDNALVVSELAAGYGDRQVLRGLDLAVAPGRITAIVGANACGKSTLLRTLSRLLSPAEGQVLLDGRSVHRIPPRELARR
MGLLPQSPLAPDGITVLDLVSRGRHPHQGLFSRWSAADDAAVAAALEATGTMDLAERAVDELSGGQRQRVWIAVALAQET
GILLLDEPTTFLDIAHQVEVLDLLTDLNRAQGTTIVMVLHDLNLAARYADALVAMAGGRIHASGPPETVLTEEMVQAVFG
LPCRTLPDPVSGRPMMLPIGRHRAGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-55 53
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-49 51
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-60 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-60 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-49 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-46 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-46 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-46 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-46 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3413 REF_jgi:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit BAC0164 Protein 9e-50 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3413 REF_jgi:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit VFG0925 Protein 1e-61 54
RSP_3413 REF_jgi:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit VFG1042 Protein 8e-50 51