Gene Information

Name : RSP_3374 (RSP_3374)
Accession : REF_jgi:RSP_3374
Strain :
Genome accession: NC_007494
Putative virulence/resistance : Resistance
Product : ABC efflux transporter, ATPase subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 439009 - 439710 bp
Length : 702 bp
Strand : -
Note : IMG reference gene:2512956885; PFAM: ABC transporter; extended by 22 aa

DNA sequence : 
TTGACCGAGGGGCCGCTCATCGCGCTTCAGGGGATCGGCCGGTCCTATGGCGAGGGCGAGGCCGAGGTGCGCGCGCTCGA
CGGGGTGGATCTCACCATCCGGCGCGGCGAGTTCGTGGCGATCATGGGCCCGTCGGGGTCGGGCAAGTCGACGGCGATGA
ACATCATCGGCTGCCTCGACCGGCCCACCTCGGGGCGCTACCTCTTCGAGGGGACCGACGTCTCGGGGCTCGACCGCGAC
GGGCGGGCGCTGCTGCGGCGGCACTTTCTGGGCTTCGTCTTTCAGGGCTTCAACCTCCTGGCCCGCACCACTGCGCTCGA
GAATGTCGAGCTGCCGCTGATCTACAAGGGCCTGCCGCGGGCCGAGCGGATCGAGAAGGCGCAGCGGGCGCTGGCGCGGG
TGGGGCTTGCCGGGCGCGAGCATCACGATCCCTCGCAGCTCTCGGGCGGCCAGCAGCAGCGGGTGGCCATCGCCCGCGCG
CTGGCGGGCGAACCCGCGGTGATCCTTGCCGACGAGCCCACAGGCAACCTCGACAGCCAGCGGTCGCATGAGATCATGCA
GCTGATGCAGGCGCTGAACCGCGAAGGGATCACCATCGTCATGGTCACCCACGAAGAGGATATCGCGGCCTATGCCGGGC
GGCTCGTCGTCTTCACCGACGGCCATCTCACGCGGGACGAGCCGGTGAAGGCGAGGGCCTGA

Protein sequence : 
MTEGPLIALQGIGRSYGEGEAEVRALDGVDLTIRRGEFVAIMGPSGSGKSTAMNIIGCLDRPTSGRYLFEGTDVSGLDRD
GRALLRRHFLGFVFQGFNLLARTTALENVELPLIYKGLPRAERIEKAQRALARVGLAGREHHDPSQLSGGQQQRVAIARA
LAGEPAVILADEPTGNLDSQRSHEIMQLMQALNREGITIVMVTHEEDIAAYAGRLVVFTDGHLTRDEPVKARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-31 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-28 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_3374 REF_jgi:RSP_3374 ABC efflux transporter, ATPase subunit NC_012469.1.7686878. Protein 1e-53 56
RSP_3374 REF_jgi:RSP_3374 ABC efflux transporter, ATPase subunit NC_008702.1.4606598. Protein 1e-42 51
RSP_3374 REF_jgi:RSP_3374 ABC efflux transporter, ATPase subunit CP001581.1.gene798.p Protein 1e-35 47
RSP_3374 REF_jgi:RSP_3374 ABC efflux transporter, ATPase subunit CP001581.1.gene598.p Protein 5e-33 43