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Name : RSP_2249 (RSP_2249) Accession : REF_jgi:RSP_2249 Strain : Genome accession: NC_007493 Putative virulence/resistance : Resistance Product : multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 865104 - 866324 bp Length : 1221 bp Strand : - Note : IMG reference gene:2512954178; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein DNA sequence : ATGCAACAGCCCCGGCTCGCCCTTGCCTTCATCCTGATCACCGTGGCGCTCGACGCGATCGGGATCGGGCTGATCTTTCC CGTGATGCCCGACCTCATCCTCGAGATCACGGGCCAGCCGCTGTCCGAGGCGGCGGTCTGGGGCGGCCTTCTGTCGGCCT CCTTCGCCGTGATGCAGTTCCTGTTCGGCCCGACCATCGGCAGCCTCTCCGACCGGTTCGGCCGGCGGCCGATCCTTCTC GGCTCGCTCGTCCTCATGTCGGGCACATACCTCGCCATGGCGCTCGCCCCCACGATGGCGATCCTGCTTGCAGCGAGGAT CGTGGCGGGGATCGTGTCGGCCACCTATGCCACCGCCTCGGCCTTCATCGCCGACGTGACCCCGCCCGAGGACCGCGGCA AGCGCTTCGCCCTGGTGGGCGCGGGCTTCGGGATCGGCTTCGTGCTGGGGCCGGCGCTGGGAGGCCTTCTGGCGGGGCTC GACACGCGCGCGCCCTTCTATGCGGCGGCGCTGATGGCGCTGCTCAACCTCGGGCTCGGAAGCCTGATCCTGCCCGAGAC GGTGACGGACGCCACCCGCCGCGCCTTCACGCTCTCGCGCGCGAACCCTCTGGGCGCCCTGCGCGCGGTCGCCCGCCTGC CCGGCCTCAGCCGTCCGCTCGCCGTGTTCCTGATCCTCGGGATCGCCATGAACGTCTATCCGGCGGTCTGGGCCTTCTAT GGACAGGCGCAGTTCGGCTGGGGCGCGGGCATGGTCGGGGCGTCCCTCGCGCTCTACGGCATCAGCTTTGCGGTGGGACA GGTGGCGCTGGTGGGGCCGGCGATCCGGCACCTCGGCGAGCACCGCACGGCGCTGGTGGGGATCTGGGTCGACATCGTCA CCCTGGCGATTCTGGGCGTCCTTGCATCCGGCACGGGGGTGCTCTTTCTCATCCCGGTGACGGCGCTCGGCGGCGTGGTG GTGCCCGCGCTCCAGTCCATCCTGTCGCGCGCTACTCCGGCGGATGCGCAGGGCGAGCTGCAGGGCGTGCTGGCCTCGCT GAACGCCATCGCCATGATCGCCTCGCCGCTGGTCATGACCGCGACCTTCCGCGCCTTCACCGCGCCGGGCGCGCCGCTGC ACCTGCCCGGCGCGCCGTTCCTGCTCGCCTCGCTGCTGATGGTGGGCGCGCTGGTGCTGCATGTCCGAGGTGCGGGACAG CCGGAGAGGGACGCTGCCTGA Protein sequence : MQQPRLALAFILITVALDAIGIGLIFPVMPDLILEITGQPLSEAAVWGGLLSASFAVMQFLFGPTIGSLSDRFGRRPILL GSLVLMSGTYLAMALAPTMAILLAARIVAGIVSATYATASAFIADVTPPEDRGKRFALVGAGFGIGFVLGPALGGLLAGL DTRAPFYAAALMALLNLGLGSLILPETVTDATRRAFTLSRANPLGALRAVARLPGLSRPLAVFLILGIAMNVYPAVWAFY GQAQFGWGAGMVGASLALYGISFAVGQVALVGPAIRHLGEHRTALVGIWVDIVTLAILGVLASGTGVLFLIPVTALGGVV VPALQSILSRATPADAQGELQGVLASLNAIAMIASPLVMTATFRAFTAPGAPLHLPGAPFLLASLLMVGALVLHVRGAGQ PERDAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 9e-39 | 41 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 1e-38 | 41 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 7e-39 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | AY264780.2.gene3.p01 | Protein | 5e-52 | 45 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | AF090987.gene.p01 | Protein | 5e-42 | 43 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | Y19114.gene.p01 | Protein | 7e-46 | 42 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | X75761.gene.p01 | Protein | 3e-39 | 41 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | NC_010410.6002597.p0 | Protein | 5e-39 | 41 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | CP001485.1.gene2821. | Protein | 5e-39 | 41 |
| RSP_2249 | REF_jgi:RSP_2249 | multidrug (Tetracycline) efflux pump, Major facilitator superfamily (MFS) | AF534183.gene.p01 | Protein | 4e-39 | 41 |
