Gene Information

Name : RSP_1332 (RSP_1332)
Accession : REF_jgi:RSP_1332
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : H+-transporting two-sector ATPase, alpha/beta subunit
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 3100796 - 3102106 bp
Length : 1311 bp
Strand : +
Note : IMG reference gene:2512956378; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family

DNA sequence : 
ATGTCGGGTGAATTTGACGGACTTCTGGCGGAGATCGCGGCGATCTCGCTGAGCCGCCGCTATGGGCGCGTGACCGGGAT
CGGCCGGGGAACCTTGTCCGTCGGAGGCCTCGAGCAGGGCACCGCGCTGGGCGACCGGGTGGAAATCTGCGGCGCGGGCG
GCATCCTCGGCGGCGAGGTTCTGCGGCTTTCGTCGCACGAGGTGACGATCCTGCCCGACGGCAGCCCGGAAGGCCTCGCG
ATCGGCGATGCGGTTGCTCTCGTCGGCCCCGCAGAGATCGCGCCGGACGACAGCTGGATCGGCCGGATCGTCGATCCGCT
CGGCCGCCCGCTCGACGGGCGCCCGCTGTTTCGCGGCCCGCGCGCGCGTCCCTTGCGCGCGGCCGCGCCGCAAGCTGCGG
CGCGCCGCAGCCTCGGGCCGCGGCTTCCCACCGGAGTTGCGGTCTTCGACACGCTGCTGCCTCTTGTCCAGGGGCAGCGG
ATCGGGCTCTTCGCGGGGTCAGGGGTGGGGAAGTCCTCGCTTCTCGCCAAGTTCGCGCGGAGCGTCGTGGCCGATGTGGT
GGTGATCGGGCTCGTGGGCGAGCGGGGTCGCGAGCTGCGCGAGTTCACCGAGCGGGTGCTCGGGCCTGCGGGCATGGCGC
GTGCGGTGGTGGTGACGGCCACCTCCGACCAGTCGCCGCTGGTTCGCCGTCGCTGCGGCTGGGCGGCCATGGCGGTGGCC
GAGCATTTCCGCGACCAGGGGCTTCACGTGTTGCTCCTCGTCGATTCGATCACCCGTTTTGCCGAAGCTCATCGCGAGGT
CGCGCTCGCGGGCGGCGAGGCGGCGAGCATGAGAGGCTTTCCCCCGTCGACAGCCCACACGATCATGGCCCTGGCCGAAC
GCGCGGGACCGGGCGCTGAGGGCACCGGCGACATCACGGCGGTCTTCTCAGTTCTCGTGGCCGGGTCCGACATGGAGGAG
CCGGTGGCAGATATTCTCCGCGGAGTGCTCGACGGCCATGTGGTGATGGATCGCAAGATCGCCGAGCGCGGACGCTTTCC
GGCGATCGACCTGCTGCGATCCGTGTCGCGGGCCCTGCCTGAGGCCGCGAGCACGGCCGAAAATGCGCTGATCGCCGAGG
CGCGTCGGCTGCTCGGGGCCTGGGACCGTGCCGAGATGATGATCCAGGCGGGGCTCTATGCCAGAGGATCCGATCCGCTC
GTGGATGCGGCGATCCGGGTCTGGCCCGCGCTCGACGCCTTTCTGGCCGAGGATGCGTCGGACGGCATCGACGCCAGTTT
CCGTCGCCTGGCCGACTGTCTCGGGCTCTGA

Protein sequence : 
MSGEFDGLLAEIAAISLSRRYGRVTGIGRGTLSVGGLEQGTALGDRVEICGAGGILGGEVLRLSSHEVTILPDGSPEGLA
IGDAVALVGPAEIAPDDSWIGRIVDPLGRPLDGRPLFRGPRARPLRAAAPQAAARRSLGPRLPTGVAVFDTLLPLVQGQR
IGLFAGSGVGKSSLLAKFARSVVADVVVIGLVGERGRELREFTERVLGPAGMARAVVVTATSDQSPLVRRRCGWAAMAVA
EHFRDQGLHVLLLVDSITRFAEAHREVALAGGEAASMRGFPPSTAHTIMALAERAGPGAEGTGDITAVFSVLVAGSDMEE
PVADILRGVLDGHVVMDRKIAERGRFPAIDLLRSVSRALPEAASTAENALIAEARRLLGAWDRAEMMIQAGLYARGSDPL
VDAAIRVWPALDAFLAEDASDGIDASFRRLADCLGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-60 42
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-60 42
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-59 41
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-59 41
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 8e-60 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-50 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 9e-51 41
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-59 41
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 6e-50 41
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-52 41
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 5e-49 41
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 5e-49 41
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RSP_1332 REF_jgi:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit VFG2331 Protein 4e-59 45
RSP_1332 REF_jgi:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit VFG0390 Protein 2e-56 42
RSP_1332 REF_jgi:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit VFG0192 Protein 3e-51 41
RSP_1332 REF_jgi:RSP_1332 H+-transporting two-sector ATPase, alpha/beta subunit VFG0048 Protein 3e-56 41