Gene Information

Name : fliP1 (RSP_1309)
Accession : REF_jgi:RSP_1309
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : Type III secretion system inner membrane P protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3083366 - 3084082 bp
Length : 717 bp
Strand : -
Note : IMG reference gene:2512956355; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
ATGCGCCTCCTGCTGGTCCTGCTTCTCGTGTTCGGCGGCGTCGGCCCGGCCACGGCGCAGAGCCTCTCGCTCGACCTCGG
CGACGGCGGCTCGCTCACCGCGCGCAGTGTGCAACTCATCGCCGTCATCACGCTCCTGAGCCTCGTGCCGGCGCTGGCGA
TGATGATCACCTGCTTTCCCTTCATCGTGACGGTGCTGTCGATCCTGCGCCAGGCCATCGGCCTGCAGCAGGCGCCGCCC
AACATGCTGATCGTGAGCCTCGCGCTGTTCCTGACCTGGTATGTGATGGATCCCGTCTTCACCGAAGCCTGGACGCGAGG
GATCGGGCCGCTCACACGGAACGAGCTGGACCTGCCCCAGGCCCTCGCCGCCGCCGCCGTTCCCTTCCGGGGCTTCATGA
CCGGCCGGATCGACCCGGACACCCTCGCCGCCCTGCAGGCCCTCCGGCCGGGCCCTGCGGCCCCGCCGTCCGAGGTGTCC
TTCTCCGTGCTGGTGCCGTCCTTTCTACTGTCCGAGATCCAGCGCGCCTTCGAGATCGGCTTTCTGATCTACCTGCCCTT
CCTCATCATCGATCTCGTCGTCTCGGCCGTCCTCATGTCGATGGGCATGATGATGGTCCCGCCGGCCGTCGTCTCGATGC
CCTTCAAACTGGCCTTCTTCGTCGTGGCCGACGGCTGGAGCCTGATCTCGGGCGCGCTCGTCCGCAGCTACTTCTGA

Protein sequence : 
MRLLLVLLLVFGGVGPATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPP
NMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLAALQALRPGPAAPPSEVS
FSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSYF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-12 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-12 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-12 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-12 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-14 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-09 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-14 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-14 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 8e-15 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-09 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-14 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-14 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-14 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG2494 Protein 5e-25 47
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG2016 Protein 1e-25 45
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG1259 Protein 5e-25 45
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG2338 Protein 4e-21 43
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG0394 Protein 2e-14 42
fliP1 REF_jgi:RSP_1309 Type III secretion system inner membrane P protein VFG0188 Protein 9e-15 42