Gene Information

Name : sitD (RSP_0908)
Accession : REF_jgi:RSP_0908
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2656047 - 2656895 bp
Length : 849 bp
Strand : +
Note : IMG reference gene:2512955939; PFAM: ABC 3 transport family

DNA sequence : 
ATGACCGAGACGCTCCTCTTCCCGTTCCAGTTTCCCTTCATGCAGAACGCCTTCCTCGTCTGCCTGCTGGTGGCGGTGCC
GACGGCGCTTCTCTCCTGCCTTCTGGTCCTGAAGGGCTGGGCGCTGATGGGCGATGCCATCAGCCACGCCATCCTGCCGG
GCGTGGTGCTGGCCTATATCGCGGGCGTGCCGCTGCTGGTGGGCGCCTTCGGCGCGGGCATGGCCTGCGCGCTCGTCACG
GGCTTCCTCGCGGGCAACAGCCGGGTCAAGCAGGACACGGTGATGGGCGTGGTCTTCGCCGGCATGTTCGGGCTGGGGCT
GCTGCTCTACACCTCCATCGAGACGGACGTGCATCTCGACCATATCCTCTTCGGCAACATGCTGGGCGTGGGACCCGAGG
ATCTTCTGGTCTCGGGGGCGATCTCGGCGGGCGTGACGGGGGCGCTCCTGCTCACCTGGAAGGATCTGCTTCTCCATGCG
TTCGATCCGGCGCAGGCGCGGGCCTCGGGCCTCAGGGTGGGGCTGCTGCATTACGGCCTCCTGACCGCGCTCGCGCTGAC
CATCGTGGCCACGCTGACCGCCACCGGCCTCATCCTCGCCGTGGGCCTGCTGATCGCGCCGGGAGCCATCGCCTTCCTGA
CGGTGCGGCGCTTCGGGCCGATGCTGATCGTTGCGGTGGCGGTCTGCCTTGCCGCGATGCTGGCCGGCACCTATGCGAGC
TTCTTCCTCGACAGCGCCCCCGCCCCCACCATCATCCTGATCCTGAGCGGGATCTTCGTGCTGGCCTTCCTCGCCCGGCT
GCGGCGTAACCGGCGCGCGGCGCTCAGCGCGGCAGCCCCGCCTCGCTGA

Protein sequence : 
MTETLLFPFQFPFMQNAFLVCLLVAVPTALLSCLLVLKGWALMGDAISHAILPGVVLAYIAGVPLLVGAFGAGMACALVT
GFLAGNSRVKQDTVMGVVFAGMFGLGLLLYTSIETDVHLDHILFGNMLGVGPEDLLVSGAISAGVTGALLLTWKDLLLHA
FDPAQARASGLRVGLLHYGLLTALALTIVATLTATGLILAVGLLIAPGAIAFLTVRRFGPMLIVAVAVCLAAMLAGTYAS
FFLDSAPAPTIILILSGIFVLAFLARLRRNRRAALSAAAPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-53 62
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-53 62
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-53 62
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-53 62
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-53 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD REF_jgi:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD BAC0352 Protein 9e-54 62
sitD REF_jgi:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD BAC0442 Protein 5e-42 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD REF_jgi:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD VFG0528 Protein 9e-54 62