Gene Information

Name : sitC (RSP_0906)
Accession : REF_jgi:RSP_0906
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2655190 - 2656050 bp
Length : 861 bp
Strand : +
Note : IMG reference gene:2512955938; PFAM: ABC 3 transport family

DNA sequence : 
ATGAGCGCGGCTGAGCTCTGGGAGCCGTTCCTCTACGGCTACATGACCAACGCCATGTGGGTCTCGGCGCTGGTGGGGGC
GGTCTGCGCCTTCCTGTCCTGCTTCCTGATGCTGAAGGGCTGGTCGCTGATCGGCGACGCCCTCTCGCATTCCGTCGTGC
CGGGCGTGGCGGGCGCCTATGTGCTGGGCCTGCCCTTCGCGCTCGGCGCCTTCCTTGCGGGCGGGCTCGCGGCGGGGGCC
ATGCTCTTCCTCTCCGGCCGCAGCGGGCTCAAGACCGACGTGGTAATCGGGCTGATCTTCACCTCCTTCTTCGGGCTCGG
CCTCTTCATGATCTCGGTCGATCCGATGGCGATCTCGATCCAGACCATCATCATGGGCAACATCCTCGCCATCTCGCCCT
ACGACACGGCGCAGCTCGCGGTGATCGGGGTGGTCTCGCTCGCGATCCTGCTCGCGACATGGAAGGACCTGATGGTGACC
TTCTTCGACGAGACCCACGCCCGTTCCATCGGGATCCGCACGGGGGCGATGAAGCTTCTGTTCTTCACGCTGCTCTCGGC
CTCCATCGTGGCGGCGATGCAGACGGTGGGGGCCTTCCTCGTGATTGCCATGGTGGTGACGCCCGGCGCCACGGCCTACC
TGCTCTGCGACCGCTTCCCGCGCCTGCTGACGCTGGCCGTGGCCATCGGAGCCGCCACGGGCTTCCTCGGGGCCTACATC
TCCTATTTCCTCGACGGGGCCACGGGGGCGGTGATCGTGACGCTGCAGACGGCGCTCTTCCTGCTGGCCTTCACCTTCGC
GCCCAAGCACGGGATGCTGGCCGCCCGCCGCCGCGCTGCCGAGGCGCTGGAGCAGCCATGA

Protein sequence : 
MSAAELWEPFLYGYMTNAMWVSALVGAVCAFLSCFLMLKGWSLIGDALSHSVVPGVAGAYVLGLPFALGAFLAGGLAAGA
MLFLSGRSGLKTDVVIGLIFTSFFGLGLFMISVDPMAISIQTIIMGNILAISPYDTAQLAVIGVVSLAILLATWKDLMVT
FFDETHARSIGIRTGAMKLLFFTLLSASIVAAMQTVGAFLVIAMVVTPGATAYLLCDRFPRLLTLAVAIGAATGFLGAYI
SYFLDGATGAVIVTLQTALFLLAFTFAPKHGMLAARRRAAEALEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-72 75
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-72 75
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-72 75
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-72 74
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-72 74
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-33 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-33 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-33 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-33 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0351 Protein 1e-72 75
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0441 Protein 1e-57 64
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0352 Protein 1e-33 42
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC BAC0442 Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC VFG0527 Protein 1e-72 75
sitC REF_jgi:RSP_0906 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC VFG0528 Protein 1e-33 42