Gene Information

Name : sitB (RSP_0905)
Accession : REF_jgi:RSP_0905
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, ATPase subunit SitB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2654310 - 2655203 bp
Length : 894 bp
Strand : +
Note : IMG reference gene:2512955937; PFAM: ABC transporter

DNA sequence : 
ATGAGACCGGAGATCCCCTCGGCCGGGGCGGAGGCGGGCGCGGGCATCTCGGTCCGCGACGTGACCGTGACCTACCGCAA
CGGCCATACGGCGCTGCGCCATGCGAGCTTCTCGCTGCCGCGCGGGACGGTGGCGGCGCTCGTGGGCGTCAACGGGGCGG
GCAAGTCCACGCTCTTCAAGGCGGTCATGGGCCTCGTGCCGGTGGGCTCGGGCGAGATCCGGCTGCTCGGTCGCACGGTG
CCCGAGGCACTGCGGCAGAATCTCGTCGCCTATGTGCCGCAATCCGAGGAGGTGGACTGGACCTTCCCGGTGCTCGTCGA
GGATGTGGTGATGATGGGCCGCTACGGCCACATGGGCTTCCTGCGCCGCCCGAAGGCCGCCGACCGCGCCGCCGTGGCCG
AGGCGCTGGCCCGCGTCGGCATGGAGGGGCTGCGCCACCGCCAGATCGGCGAGCTCTCGGGCGGTCAGAGGAAGCGCGTG
TTTCTCGCCCGGGCGCTGGCGCAGGAAGGGCAGGTGATCCTGCTCGACGAGCCCTTCACCGGCGTCGATGTCCAGACCGA
GGGCGAGATCGTGGCCCTCCTGCGCGAATTGCGCGCCGAGGGGCGGGTGATGCTGGTTTCGACCCACAATCTCGGCTCGG
TGCCGGAATTCTGCGACCGCACCGTGCTCGTGAAGGGCACCGTGCTGGCCTACGGGCCCACCGAGACCACCTTCACCCAT
GCCAATCTCGAGGCGGCCTTCGGCGGCGTGCTCCGGCGCTTCACCCTGTCGGGCACGCTCCTGCACGACGACGACGACCC
GCGCGAGGTCAGCATCCTCACCGACGACGAGCGGCCCTTCGTGCAGTATGGCGGCCGCACCCACCGGCAGGAGGCCGAGG
ATGAGCGCGGCTGA

Protein sequence : 
MRPEIPSAGAEAGAGISVRDVTVTYRNGHTALRHASFSLPRGTVAALVGVNGAGKSTLFKAVMGLVPVGSGEIRLLGRTV
PEALRQNLVAYVPQSEEVDWTFPVLVEDVVMMGRYGHMGFLRRPKAADRAAVAEALARVGMEGLRHRQIGELSGGQRKRV
FLARALAQEGQVILLDEPFTGVDVQTEGEIVALLRELRAEGRVMLVSTHNLGSVPEFCDRTVLVKGTVLAYGPTETTFTH
ANLEAAFGGVLRRFTLSGTLLHDDDDPREVSILTDDERPFVQYGGRTHRQEAEDERG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-83 72
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-83 72
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-83 72
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-83 72
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-83 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB REF_jgi:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB BAC0350 Protein 9e-84 72
sitB REF_jgi:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB BAC0440 Protein 5e-84 64
sitB REF_jgi:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB BAC0400 Protein 2e-46 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB REF_jgi:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB VFG0526 Protein 8e-84 72