Gene Information

Name : sitA (RSP_0904)
Accession : REF_jgi:RSP_0904
Strain :
Genome accession: NC_007493
Putative virulence/resistance : Virulence
Product : ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2653420 - 2654313 bp
Length : 894 bp
Strand : +
Note : IMG reference gene:2512955936; PFAM: Periplasmic solute binding protein family

DNA sequence : 
ATGAACATGCGACGGATCGGATGGGCCGCCTCGATGGCGACGCTCCTCATGGCAGGGCCGGCGCTCGCCGACCGGCTGAA
GGTCGCCACGACCTTCACGGTCATCGCCGACATGGCGCAGAACGTGGCGGGCGACGCGGCCGAGGTGGTGTCGATCACCC
GCCCCGGCGCCGAGATCCACGGCTACGAGCCCACGCCGCGCGATATCGTGCGCGCCTGGGACGCGGACCTGATCCTCTGG
AACGGGCTCAATCTCGAGCTCTGGTTCGAGCAGTTCCTCTCCAACCTGAAGGATGTGCCGTCGGTGACGGTGAGCGACGG
GATCGAGCCGCTGGCGGTCGCGGGCGGCGAATATCGCGGCAGGCCCAATCCGCACGCCTGGATGGGCCTCGACAATGCCA
TGATCTACATCGACAACATCGCCCGCGCGCTGGCCGAGGCCGATCCGGCCCATGCCGAGACCTATCGGGCCAATGCGGCA
GGCTACAAGGAGCGGCTCCGGGCGACCATCGGGCCCCTGCGCGACCGGATCGCGGCCCTGCCCGAGGAGCGGCGCTGGCT
CGTGACCTGCGAGGGCGCCTTTTCCTATCTCGCCCGCGACTTCGGGCTGAAGGAGCTCTATCTCTGGCCGATGAACACCG
ATCAGGTCGGCACGCCGCAGCAGGTGCGCACGGTGATCGACGGGGTGAAGGCCCACGCGATCCCGGCGGTCTTCTGCGAG
AGCACGGTGAACAACGCCCCCGCCCGGCAGGTCGCGCGCGAGACGGGGGCGGCCTACGGCGGCATGCTCTATGTGGACAG
CCTGAGCCCGCGCGACGGGCCGGTGCCGACCTATCTCGACCTCCTGCGGGTGACGGCCGAGACCATCGCGAACGGGCTGG
AGGGCACGAGATGA

Protein sequence : 
MNMRRIGWAASMATLLMAGPALADRLKVATTFTVIADMAQNVAGDAAEVVSITRPGAEIHGYEPTPRDIVRAWDADLILW
NGLNLELWFEQFLSNLKDVPSVTVSDGIEPLAVAGGEYRGRPNPHAWMGLDNAMIYIDNIARALAEADPAHAETYRANAA
GYKERLRATIGPLRDRIAALPEERRWLVTCEGAFSYLARDFGLKELYLWPMNTDQVGTPQQVRTVIDGVKAHAIPAVFCE
STVNNAPARQVARETGAAYGGMLYVDSLSPRDGPVPTYLDLLRVTAETIANGLEGTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-87 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-87 63
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-87 63
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-87 63
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-87 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA REF_jgi:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA BAC0349 Protein 3e-87 63
sitA REF_jgi:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA BAC0439 Protein 5e-87 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA REF_jgi:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA VFG0525 Protein 2e-87 63