Gene Information

Name : Pfl01_0747 (Pfl01_0747)
Accession : YP_346479.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : Phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 877388 - 878644 bp
Length : 1257 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTACTAACGCAACCCGCCTCTCCGATCGCCAGCTCAAGGCAGTCAAGGCAACTGGTAAAGACTTCGTCCTCAGCGA
CGGCGACGGCCTGCAGCTTCGAGTACGCGCCAGCGGCTCGATGATGTGGAATTTCAATTACCGCGAGCCGTTGACCAGAA
GCCGTCTTAATATGGCGCTCGGTCCATACCCCGACCTCTCGCTAGCCAACGCCCGGAAGAAAGCAGCAGAGGCGCGTGAG
CTGCTCGCTTTGGGCATTGATCCCAAAACCCAGCGTGATGAGGTAAGGCAAGCCAAACTTGCTGAGACTGAACACACGTT
CGAGAAGGTGGCCACCGCCTGGTTCGAGCTGAAGAAAGACTCCGTAACCAAAGCCTACGCCGAAGACATTTGGAGATCGC
TGACGCTCCATGTGTTCCCAAGCATGAAAACAACGCCGCTTTCTCAAATCACTGCTCCGATGGTTATCAAGATCCTTCGC
CCAATCGAGGCCAAAGGGAGTCTCGAAACCGTGAAGCGATTGAGTCAACGACTCAACGAGATCATGACCTACGGGGTCAA
CTCCGGGCTGATATTTGCGAACCCCCTCAATGGAATTCGGGCGGTCTTCAAGAAACCCAAGAAAGAGAACATGGCTGCGC
TACCACCTGAGGAGCTTCCCGAGCTCATGATGGAAATCGCGAATGCCAGCATCAAGCGCACGACCCGCTGCCTGATCGAA
TGGCAGTTGCACACGATGACCCGCCCCGCCGAAGCAGCCACCACACGATGGGCAGATATCGACTTCGACAAGCGCATTTG
GACCATTCCGCCAGAGCGCATGAAAAAGCGGCGCCCGCACACAATCCCCCTCACCGATCAGGCACTTTCGTTACTCGAAA
CGCTCAAGCAACTCAGTGGTAACAGAGAGTACGTGTTCCCCTCAGATAGAAACCCCCGCACCCATGCCAATAGCCAGACC
GCCAACATGGCGTTGAAGCGCATGGGCTTTCAGGACCGTCTAGTCAGCCACGGCTTGCGCTCGATGGCGAGCACCATCCT
GAATGAGCATGGCTGGGATCCGGAGCTGATTGAGGTCGCACTTGCGCATGTCGACAAGGACGAAGTTCGTAGCGCCTACA
ACCGGACGGATTACATCGAACGCCGGCGTCCGATGATGGCTTGGTGGAGTGAACATATCCAGAAGGCGGCCACCGGCAGC
CTGTCCGCATCGGCCATCAATCAAACTAGAGATCGCAACGTCGTACCGATTCGCTGA

Protein sequence : 
MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREPLTRSRLNMALGPYPDLSLANARKKAAEARE
LLALGIDPKTQRDEVRQAKLAETEHTFEKVATAWFELKKDSVTKAYAEDIWRSLTLHVFPSMKTTPLSQITAPMVIKILR
PIEAKGSLETVKRLSQRLNEIMTYGVNSGLIFANPLNGIRAVFKKPKKENMAALPPEELPELMMEIANASIKRTTRCLIE
WQLHTMTRPAEAATTRWADIDFDKRIWTIPPERMKKRRPHTIPLTDQALSLLETLKQLSGNREYVFPSDRNPRTHANSQT
ANMALKRMGFQDRLVSHGLRSMASTILNEHGWDPELIEVALAHVDKDEVRSAYNRTDYIERRRPMMAWWSEHIQKAATGS
LSASAINQTRDRNVVPIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 3e-118 62
int AAK20803.1 integrase Not tested VPI Protein 3e-118 62
unnamed AAA82714.1 integrase Not tested VPI Protein 3e-118 62
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 4e-118 62
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 4e-118 62
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-98 53
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-91 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-91 51
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 4e-91 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_0747 YP_346479.1 Phage integrase VFG1092 Protein 1e-91 51