Gene Information

Name : Pfl01_0538 (Pfl01_0538)
Accession : YP_346271.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 623970 - 625367 bp
Length : 1398 bp
Strand : +
Note : unwinds double stranded DNA

DNA sequence :
ATGAACGAAATCTCCGCTCCCGAGCAATACGATCTGCAAACCGCCGCGCTGAAGGTGCCGCCGCATTCCATCGAGGCCGA
ACAGGCCGTGCTCGGTGGTCTGATGCTGGACAACAACGCCTGGGAACGCGTGCTCGATCAAGTCTCCGACGGCGATTTCT
ACCGACATGACCACCGTCTGATTTTCCGTGCGATCGCCAAACTGGCCGATCAGAACCTGCCGATCGATGTCGTGACCCTT
GCCGAGCAACTGGACAAGGAAGGTCAGACTTCGCAGGTCGGCGGCCTCGGTTACCTGGGTGAGCTGGCGAAAAACACGCC
GTCCGTCGCCAACATCAAGGCCTATGCGCAGATCGTCCGCCAGCGCGCGACGTTGCGTCAGCTGATCGGTATCAGCACCG
AAATTGCCGACAGCGCCTTCAATCCCGAAGGCCGCACCGCCGAGGAAATCCTCGACGAAGCCGAGCGGCAGATCTTCGCG
ATTGCCGAGGCCCGGCCAAAAACCGGCGGCCCGGTGGGTGTGAATGACCTGCTGACCAAGGCCATCGACCGCATCGACAC
CCTGTTCAACACTGCCGACTCGATCACCGGCCTGTCCACCGGCTACACCGACCTCGACGAGAAGACCAGCGGCCTGCAAC
CGGCCGACCTGATCATCGTCGCCGGCCGTCCGTCGATGGGTAAGACCACCTTCGCGATGAACCTGGTGGAAAACGCCGTG
TTGCGCAGCGACAAAGTGGTGCTGGTGTACTCCCTCGAGATGCCAGGCGAATCGCTGATCATGCGTATGCTGTCGTCCCT
CGGCCGTATCGACCAGACCAAGGTACGTTCCGGCCAGTTGGAAGACGACGACTGGCCGCGTCTGACCTCGGCGGTCAATC
TGCTCAACGACCGCAAGCTGTTCATCGATGACACCGCCGGCATCAGTCCGTCGGAGATGCGTGCCCGGACCCGGCGGCTG
GTGCGCGAGCACGGCGACATCGGCCTGATCATGATCGACTACCTGCAGCTGATGCAGATCCCGGGTTCCAGCGGCGACAA
CCGGACCAACGAGATTTCCGAGATCTCCCGATCCCTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTCGCCCTGT
CGCAGCTCAACCGCTCCCTGGAACAGCGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAG
CAGGACGCCGACGTGATCATGTTCGTGTACCGGGATGAGGTGTATCACCCGGAAACCGAACACAAGGGCATCGCCGAAAT
CATCATCGGCAAACAGCGGAACGGTCCGATCGGCTTCATTCGCCTGGCTTTCATCGGCAAATACACACGTTTCGAAAACC
TCGCGCCGGGCAGTTACAACTTCGACGACGACGAGTAA

Protein sequence :
MNEISAPEQYDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSDGDFYRHDHRLIFRAIAKLADQNLPIDVVTL
AEQLDKEGQTSQVGGLGYLGELAKNTPSVANIKAYAQIVRQRATLRQLIGISTEIADSAFNPEGRTAEEILDEAERQIFA
IAEARPKTGGPVGVNDLLTKAIDRIDTLFNTADSITGLSTGYTDLDEKTSGLQPADLIIVAGRPSMGKTTFAMNLVENAV
LRSDKVVLVYSLEMPGESLIMRMLSSLGRIDQTKVRSGQLEDDDWPRLTSAVNLLNDRKLFIDDTAGISPSEMRARTRRL
VREHGDIGLIMIDYLQLMQIPGSSGDNRTNEISEISRSLKALAKEFNCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIE
QDADVIMFVYRDEVYHPETEHKGIAEIIIGKQRNGPIGFIRLAFIGKYTRFENLAPGSYNFDDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-119 58
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-107 56
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-105 52
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-104 51
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 2e-104 51
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-97 48
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 5e-97 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 5e-97 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 3e-79 42