Gene Information

Name : Pfl01_4840 (Pfl01_4840)
Accession : YP_350568.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5459307 - 5460653 bp
Length : 1347 bp
Strand : +
Note : -

DNA sequence : 
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTAGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGAAGAAGCCCAGGCACTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGTTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCAATCAACGCCCTGAAGGCCGGGGCATTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCATTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTCGGCGATTCACCGCCGATGCGCAACCTGCGCAAGCAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGACTGATTCATGAACAGGGCCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCGATTCCGTCTGAGTTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAACCGGGGCTGTTTCAGGCGGCTCATGGCGGCACACTGTTTCTCGATGAAGTGGCG
GACCTGCCACTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATACTCTGCGCGACGCACAAGGATCTCGATGCTGAAGTGGCTGCCGAGCGATTCCGTCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGTGTACCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGTCACATGCTCAAGCGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGCCTTCATCCCCATGCCCTCGAGGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGAGGGAGCTGGAGAACGTGCTTGAACGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCCGAGGATTTACGCCTGAGTGAAGGTAATGGCGCCGCCGAGGCCGGGATTGCCGATCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAACGCAAACTGATTCTGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAACTGGGGCTGGATTGA

Protein sequence : 
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLEEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGAAEAGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-104 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-104 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_4840 YP_350568.1 two-component response regulator PilR BAC0089 Protein 7e-80 44
Pfl01_4840 YP_350568.1 two-component response regulator PilR BAC0467 Protein 2e-75 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_4840 YP_350568.1 two-component response regulator PilR VFG1214 Protein 1e-174 80
Pfl01_4840 YP_350568.1 two-component response regulator PilR VFG0116 Protein 4e-63 42