Gene Information

Name : Pfl01_4458 (Pfl01_4458)
Accession : YP_350186.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Virulence
Product : two component, sigma-54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5029815 - 5031143 bp
Length : 1329 bp
Strand : +
Note : -

DNA sequence : 
ATGCTCAATTCCGTGATGGTGGTGGATGACGAAAGCAGCATTCGCAGTGCCGTCGAGCAATGGCTGAGCCTGTCCGGGTT
CGAGGTGCAGCTGTTCAGCCGCGCCGAGGAATGCCTGGCGGCGCTGCCGGCGCATTTTGCCGGGGTGATTGTCAGCGACG
TGCGCATGCCCGGCCTCAGCGGTCTTGAACTGCTGGCCGAAGTGCAGCGCCGGGATGCCGACCTGCCGGTGATTCTGCTG
ACCGGCCACGGCGACGTACCGATGGCGGTCGAAGCGATGCGCGACGGCGCCTACGATTTTCTGGAAAAACCGTTCAGCCC
CGAGACCCTGCTCGGCAGCCTGCGCCGGGCGCTGGACAAGCGTCGGCTGGTGCTGGAAAACCGCGCCCTGCACGAGCAGG
CCGACAACCGCGCCAGACTCGATGCGACACTGCTCGGCGTGTCCCGTGGCTTGCAGACCTTGCGCCGGCAGGTACTTGAT
CTGGCGACGCTGCCGGTCAATGTGCTGATCCGTGGCGAAACCGGCAGCGGCAAGGAGCTGGTCGCCCGCTGCCTGCACGA
CTTCGGCCCGCGCGCCGACAAGCCGTTCGTGGCGCTGAACTGCGCGGCGATCCCCGAGCAGTTGTTCGAAGCCGAGTTGT
TCGGGCATGAGAGCGGCGCGTTCACCGGCGCCTCGGGCAAGCGCATCGGCAAGCTGGAATACGCCGATGGCGGCACGCTG
TTTCTCGATGAAATCGAAAGCATGCCGCTGGCCCAGCAGGTGAAACTGCTGCGGGTGTTGCAGGAGCAGAAGCTGGAGCG
GCTGGGGTCGAACCAGAGCATTCGGGTGGACTTGCGGATTGTCGCGGCGACCAAACCCGACTTGCTGGATGAAGCGCGGG
CCGGGCGTTTTCGCGAGGACCTGGCGTATCGGCTGAACGTCGCAGAGCTGCGATTGCCACCGCTGCGTGATCGTCGGGAA
GACATTCCGCTGTTGTTCGAATCCTTCGCCCAGAGTGCCGCCCAGCGTTTGGGCCGGACCTTTCCGCCGCTCAGTGGCGC
GCAGTTGAGCCACCTGCTCAGTCACGACTGGCCGGGCAATGTGCGCGAGTTGGCGAACGTGGCCGAGCGGCAGGTGCTGG
GGCTGGATGAACCGGTGCAGGGTATCGATCCGGGCCAGTCGCTGGCGGCGCAGCAAGAGGCGTTTGAGGCGCAGTGTTTG
CGGGCTGCTTTGACCCGGCACAAGGGCGATGTGAAAGCCGTGCTGGAGGAACTGCAACTGCCGCGTCGTACGTTTAATGA
AAAGATGCAGCGCCATGGTTTGACCCGGGAAATGTTTATTCCCGATTGA

Protein sequence : 
MLNSVMVVDDESSIRSAVEQWLSLSGFEVQLFSRAEECLAALPAHFAGVIVSDVRMPGLSGLELLAEVQRRDADLPVILL
TGHGDVPMAVEAMRDGAYDFLEKPFSPETLLGSLRRALDKRRLVLENRALHEQADNRARLDATLLGVSRGLQTLRRQVLD
LATLPVNVLIRGETGSGKELVARCLHDFGPRADKPFVALNCAAIPEQLFEAELFGHESGAFTGASGKRIGKLEYADGGTL
FLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIRVDLRIVAATKPDLLDEARAGRFREDLAYRLNVAELRLPPLRDRRE
DIPLLFESFAQSAAQRLGRTFPPLSGAQLSHLLSHDWPGNVRELANVAERQVLGLDEPVQGIDPGQSLAAQQEAFEAQCL
RAALTRHKGDVKAVLEELQLPRRTFNEKMQRHGLTREMFIPD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR ABQ88368.1 HrpR Virulence Hrp PAI Protein 3e-45 43
hrpR AAA17651.1 positive regulatory factor Not tested Hrp PAI Protein 3e-45 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_4458 YP_350186.1 two component, sigma-54 specific, Fis family transcriptional regulator BAC0089 Protein 7e-60 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_4458 YP_350186.1 two component, sigma-54 specific, Fis family transcriptional regulator VFG1214 Protein 1e-50 44
Pfl01_4458 YP_350186.1 two component, sigma-54 specific, Fis family transcriptional regulator VFG1249 Protein 1e-57 43
Pfl01_4458 YP_350186.1 two component, sigma-54 specific, Fis family transcriptional regulator VFG1248 Protein 3e-44 43
Pfl01_4458 YP_350186.1 two component, sigma-54 specific, Fis family transcriptional regulator VFG0116 Protein 6e-43 41