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Name : Pfl01_4051 (Pfl01_4051) Accession : YP_349779.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4575106 - 4577100 bp Length : 1995 bp Strand : - Note : - DNA sequence : ATGGATAAAATGCGAGCATTTCTGCTGGGTTTGCCGCGTCGTCAAAAACGACTGCTGCAGGTGGCCACCGACGTCGTTCT CGTCTGGGGGGCGCTGTGGCTGGCATTCATCGTTCGCCTCGGAATCGATGATATGTACAACCCCATCAAAGTGCATGCCT GGCTATTCGTCTGTGCCCCGCTTGTTGCAATACCGCTGTTTATTCGATTTGGCATGTATCGCGCGGTCATGCGCTACTTC GGCAATGATGCACTAATTGCCATCATCAAGGCGGTCAGCCTTTCTTCACTGATACTCGCAGTAGTTGTCTACTGGTACAG CAATCATGAAAGTGTTGTCCCCAGATCCATCATTTTCAACTACTGGTGGCTGAGTCTGGTGATCATTGGCGGATTGCGCC TGTGCATGCGTCAGTATTTCATGGGTGACTGGTTCACCGCAGCCCAGCACGTACCGTTCACCAGTCGCGACGATGGCCTG ACCAAGGTGGCGATCTATGGTGCCGGAGTCGCCGGTAATCAGTTGGTCGCGGCTCTGCGAATGGGGCGAGTCATGCGCCC GGTGGCGTTCATCGATGATGATGCGAGTATCGCTGATCGGGCCATTTCGGGTCTGCAGGTCTATAAGCCCAAGCACATTC AGCAAATGATCGACGTGACGGGAGCGCAGGAAATTCTCCTGGCGCTGCCTTCATCCACTCGTGCCCGTCGCCGGGAAATC CTCAATTTGCTGGAAGGATTCCCACTGCATATTCGCAGTGTTCCAAGTTTTACCGACCTGGCCAGCGGCCGGGTGAAGGT CGATGACATTCAGGAAGTCGACATCGCGGACCTGCTGGGGCGCGACTCGGTGCCGGCCCAATCCGATCTGCTGGCTCACT GCATTACCGGCAAAGTGGTGATGGTGACAGGCGCGGGCGGGTCGATCGGTTCGGAGCTCTGCCGGCAAATCTTTCTGCTT GGGCCGATAACGCTTCTGCTGTTCGATCACAGTGAGTTCAATCTATACAGCATTCTGTCCGAGCTCGAACAGCGCATCGC GCGCGAGTCTGTCTCCATTCGTCTACTGCCGATTCTCGGTTCCATCCGGCATCCTCACAAGCTCCTGGATGTCATGAAGA CGTGGGGCGTGGACACTGTCTATCACGCGGCCGCCTATAAACATGTGCCCATGGTTGAACACAATATTGCCGAAGGTGTG CTGAATAACGTGATCGGCACCCTCAATACGGCGCAGGCAGCACTGCAGGCAGGTGTTTCCAACTTTGTTCTGATTTCCAC CGACAAGGCTGTGCGCCCCACCAATATCATGGGCAGCACCAAGCGACTTGCCGAGCTGACCCTGCAGGCGCTGAGTCGTG AGCTGGCCCCTGTACTGTTCGGCGACAAGGCCAATGTGTCTCGCGTCAACAAGACGCGATTCACCATGGTGCGTTTCGGA AATGTGCTGGGTTCGTCGGGGTCGGTGATTCCGCTGTTCCATAGCCAGATCAAATCCGGCGGTCCGCTGACGGTCACTCA TCCCAAGATCACCCGCTATTTCATGACGATCCCGGAAGCCGCGCAGTTGGTGATCCAGGCCGGCTCCATGGGGCAGGGGG GAGATGTCTTTGTGCTGGACATGGGAGAGCCGGTCAAAATTGTCGAGCTCGCTGAAAAGATGATTCACCTGTCCGGCCTC AGTGTGCGTTCGGAAAAGAATGTGCACGGCGATATTGCAATCGAATTCACCGGGTTGCGGCCAGGGGAGAAGCTCTATGA AGAACTCCTGATCGGTGACAATGTTTCGGCGACGCCTCACCCCATGATCATGAGTGCCAACGAGGACCTCATTCCCTGGG ACGTGCTCAAGGTTCGGCTGTCGGAATTGCTGGCTGCAGTCGAAAAGGACGACTACTCCCGCGTTCGGCAGATTTTGCGC GAAACCGTCAGTGGCTATGCGCCTGATGGAGAAATTGTCGACTGGATCTATCAGCAGCGTCGCCTCGACCCTTGA Protein sequence : MDKMRAFLLGLPRRQKRLLQVATDVVLVWGALWLAFIVRLGIDDMYNPIKVHAWLFVCAPLVAIPLFIRFGMYRAVMRYF GNDALIAIIKAVSLSSLILAVVVYWYSNHESVVPRSIIFNYWWLSLVIIGGLRLCMRQYFMGDWFTAAQHVPFTSRDDGL TKVAIYGAGVAGNQLVAALRMGRVMRPVAFIDDDASIADRAISGLQVYKPKHIQQMIDVTGAQEILLALPSSTRARRREI LNLLEGFPLHIRSVPSFTDLASGRVKVDDIQEVDIADLLGRDSVPAQSDLLAHCITGKVVMVTGAGGSIGSELCRQIFLL GPITLLLFDHSEFNLYSILSELEQRIARESVSIRLLPILGSIRHPHKLLDVMKTWGVDTVYHAAAYKHVPMVEHNIAEGV LNNVIGTLNTAQAALQAGVSNFVLISTDKAVRPTNIMGSTKRLAELTLQALSRELAPVLFGDKANVSRVNKTRFTMVRFG NVLGSSGSVIPLFHSQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVKIVELAEKMIHLSGL SVRSEKNVHGDIAIEFTGLRPGEKLYEELLIGDNVSATPHPMIMSANEDLIPWDVLKVRLSELLAAVEKDDYSRVRQILR ETVSGYAPDGEIVDWIYQQRRLDP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-77 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-73 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pfl01_4051 | YP_349779.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-116 | 46 |
