Gene Information

Name : Pfl01_4015 (Pfl01_4015)
Accession : YP_349743.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 4539417 - 4540100 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence :
ATGGGCGCAAGCATTCTCACCGCGAAGAACCTTAGCAAAGTGGTTCCCAGCGCGGAAGGTGAACTGACCATCCTGCACGA
ACTCAGCCTGGAACTGAACAAGGGCGACAGCCTGGCCATCGTCGGCGCGTCCGGTTCTGGCAAATCCACCCTGCTCGGCC
TGCTCGCCGGCCTTGATCTGCCAAGCAGCGGCGAAGTGACGCTCGCCGGACAAGCCCTGAGCCATCTCGACGAAGACCAG
CGCGCACGCATTCGCGCCGAACACGTGGGTTTCGTCTTTCAATCTTTCCAGCTGCTCGACAGCCTCAACGCGCTGGAAAA
CGTCATGCTGCCGCTGGAACTCGACGGCCGCAAAGACGCGCGAAGCCGCGCCACCGAGTTACTGCAACGGGTCGGACTCG
GCCAGCGCCTGACGCACTCGCCACGTCAGCTCTCCGGCGGTGAACAGCAGCGTGTGGCGATTGCCCGGGCGTTCGCCGCC
GAGCCCGATGTGCTGTTCGCCGACGAACCCACCGGCAACCTCGACAGCCACACCGGCGAGCGCATCAGTGACTTGCTGTT
CGAATTGAACAAGGAACGCGGCACCACCCTGGTGCTGGTGACCCACGACGAACGCCTGGCCCATCGTTGCCGGCGCCTGA
TCCGTCTTGAAGCCGGCCTGTTGGTCGCCCCTCTGGAGCCTTGA

Protein sequence :
MGASILTAKNLSKVVPSAEGELTILHELSLELNKGDSLAIVGASGSGKSTLLGLLAGLDLPSSGEVTLAGQALSHLDEDQ
RARIRAEHVGFVFQSFQLLDSLNALENVMLPLELDGRKDARSRATELLQRVGLGQRLTHSPRQLSGGEQQRVAIARAFAA
EPDVLFADEPTGNLDSHTGERISDLLFELNKERGTTLVLVTHDERLAHRCRRLIRLEAGLLVAPLEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-23 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-24 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-24 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-24 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-19 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_4015 YP_349743.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-32 46
Pfl01_4015 YP_349743.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-30 46
Pfl01_4015 YP_349743.1 ABC transporter-like protein NC_012469.1.7686946. Protein 5e-20 42
Pfl01_4015 YP_349743.1 ABC transporter-like protein CP001581.1.gene598.p Protein 1e-25 42
Pfl01_4015 YP_349743.1 ABC transporter-like protein NC_012469.1.7685735. Protein 7e-25 41