Gene Information

Name : Pfl01_3364 (Pfl01_3364)
Accession : YP_349093.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0550
EC number : 5.99.1.2
Position : 3840775 - 3842718 bp
Length : 1944 bp
Strand : +
Note : decatenates replicating daughter chromosomes

DNA sequence :
ATGCGGCTGTACCTCTGTGAAAAACCCTCCCAAGCCAAGGACATTGCGGCCGTACTCGGCGCAAAGCGTCGGGGCGACGG
CTGCTGGCTGGGAACGGACGTCACGGTGACCTGGTGCATCGGCCACCTGCTGGAAACCGCGCCGCCGGACGCCTACGACG
CCAAATACAAGCGCTGGGTGCTGGCCGACCTGCCGATCATCCCCGACAAGTGGAAAATGACTGTCAAGCCGCGTACCGCC
AGCCAGTACAAGGCGGTCAAGCGCCTGCTCGGCGAGGCCAGCGAACTGATCATCGCCACCGACGCCGACCGTGAAGGCGA
GATGATCGCCCGTGAGCTGGTCGAACACTGTCGCTATCGCGGGCCGATCCGCCGCTTGTGGCTGTCGGCGCTGGACGAAG
CCTCGATTCGCAAGGCGTTGGCGGCACTCAAACCGGGCGCCGAAACCTTCAGCCTGTATCACTCGGCACTGGGGCGCTCG
CGGGCGGACTGGCTGATCGGGATGAACATGAGTCGGCTGTTCACCCTGCTCGGCCGGCAATCGGGCTATCAAGGCGTGTT
GCCGGTGGGCCGGGTACAGACGCCGACGTTGCGACTGGTGGTGGATCGCGACCGCAGCATCGCTGACTTCGTGCCGGTCG
CGTACTGGGCCATCGACGTGCAACTGCTGCACGGAGACACGCCGTTCAACGCGCAATGGCGTGCACCGAACGATGCCTGT
GACGATCAGGATCGCTGCCTCAATCAAGCCCTCGCCCAGCAAGCGGCCGCCGCAATCAGTAGCGCTGCCAGCGCCCGGGT
GGTCAAGCTGCGCACCGAACGCATGCGCGAAGTGGCGCCCCTGCCCTTCGATCTGGGCACCTTGCAGGAAGTCTGTTCGA
AGAAGCTCGGCCTCGGTGCCCAGGAAACCCTCGACATCGCCCAGGCCCTCTACGAAACCTACAAAGTCATCACCTACCCG
CGCAGCGACTGCGGCTACCTGCCCCTGAGCCAGCACAACGAGGCGCCGGGGATTCTCGCAGCGCTGCGTCAGGCCGACCC
GAGCCTGGAAGCGCTGCGCGAGCATCTGGAACCACAGCGTCGCTCCCGCGCCTGGAACGACGCCAAGGTCAGCGCTCACC
ACGGCATCATCCCGACCGCTGCCGCGAAAAACCTGGAGCGCCTGACCGGCAAGCACCGCGCGGTCTACACGCTGATTCGC
GCGCGGTATCTGGCGCAGTTCCTGCCCAATCACGAATACGACCGCACCCAGGCCGATTTCGATTGCGCCGGGGAAGCCTT
GCGCGCTGTCGGCAAACAGATCATCGAGCCGGGCTGGAAACGCGCGTTGCCCGAAGCGCTGGCCCCGGCCAAGGGCCGTG
AAGCCCCCGCGCCACAAACACTACCGACACTGACCCAGGGTGCCGAATGCGCCGTGGCAGACGTGAAGCTCAAGGACCTG
TGGACGCAACCGCCCAAGCCCTACACCGAAGGCGACCTGATCAAGGCGATGAAGAACGTCGCCAAACTGGTGGAAGATCC
GCTGCTCAAGCAGAAACTCAAGGACACCACCGGCATCGGCACCGAAGCCACCCGCGCGTCGATCATTCAAGGGTTGCTGG
ATCGCGGCTATCTGGTGAAAAACGGCAAGGCGCTGTCCGCCACGCCCGCCGCGTTCAGCCTGATCGACGCCGTACCGCGC
GCGATTGCCGACCCCGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAGAGCGGCGAAATGAGTCTGGAAGA
ATTCGTCACCAAACAGGCCGCGTGGATGAGCAAGCAAGTGACCCGCTGCGCCGGACTGAGCCTGACCATCAGCGGCCCGC
CACCTGCCGGCAAGGCCGCTGCGCCATGGAAGAACAAACGCAAGACCACTCGGCGCAAAACCACCGGAACCAGCAAACGC
GTGGCGAAACCAGCAGCCAAATAG

Protein sequence :
MRLYLCEKPSQAKDIAAVLGAKRRGDGCWLGTDVTVTWCIGHLLETAPPDAYDAKYKRWVLADLPIIPDKWKMTVKPRTA
SQYKAVKRLLGEASELIIATDADREGEMIARELVEHCRYRGPIRRLWLSALDEASIRKALAALKPGAETFSLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLLHGDTPFNAQWRAPNDAC
DDQDRCLNQALAQQAAAAISSAASARVVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETYKVITYP
RSDCGYLPLSQHNEAPGILAALRQADPSLEALREHLEPQRRSRAWNDAKVSAHHGIIPTAAAKNLERLTGKHRAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGEALRAVGKQIIEPGWKRALPEALAPAKGREAPAPQTLPTLTQGAECAVADVKLKDL
WTQPPKPYTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMSLEEFVTKQAAWMSKQVTRCAGLSLTISGPPPAGKAAAPWKNKRKTTRRKTTGTSKR
VAKPAAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 64
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 63
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 62
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 5e-148 49
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 2e-143 49
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 3e-147 48
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 3e-147 48
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 3e-147 48
topB AAW83109.1 TopB Not tested GGI Protein 6e-113 42