Gene Information

Name : Pfl01_3354 (Pfl01_3354)
Accession : YP_349083.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3828134 - 3828796 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
GTGCGTTTATTACTGATCGAGGATGACGTGGCCCTCGGCGAGGGCATTCATCAGGCGCTGGGGCGCGAGGGCTACACGGT
CGACTGGCTCAAGGACGGCAGCAGCGCCCTGCACGCCCTGCTCAGCGAAAACTTTGATCTGGCGGTGCTCGATCTCGGCC
TGCCGCGCATGGATGGGCTCGAAGTCCTGCGTCGTCTGCGTGGCAGCGGTTCGAACCTGCCGGTGCTGATCCTCACCGCC
CGCGATGCCACCGAAGACCGCATCGCGGGGCTGGACGCCGGCGCCGACGACTACCTGATCAAGCCCTTCGACCTGGCCGA
ACTCAAGGCCCGCCTGCGCGCCCTTCTGCGACGCAGTGCCGGACGCGCGCAGATGCTGATCGAACATGCCGGCATCAGCC
TCAACCCCGGCACCCAGCAAGTCAGCTATCTGGGCCAACCGGTGGTACTCACGCCCAAGGAATATCAGTTGCTGCACGAA
CTGCTCTCGCCGCCGGGTCGGGTCATGACCCGTGACCACCTGACACAACTGCTTTACGGCTGGAACGAAGAAGCCGAAAG
CAACACTCTCGAAGTGCATATTCATCACCTGCGCAAGAAATTCTCCACCGACCTGATCCGCACCATTCGCGGCGTGGGTT
ATCTGGTGGAGGAGCGCCGATGA

Protein sequence : 
MRLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGLEVLRRLRGSGSNLPVLILTA
RDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSAGRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHE
LLSPPGRVMTRDHLTQLLYGWNEEAESNTLEVHIHHLRKKFSTDLIRTIRGVGYLVEERR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-32 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-28 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_3354 YP_349083.1 two component transcriptional regulator BAC0487 Protein 3e-34 50
Pfl01_3354 YP_349083.1 two component transcriptional regulator NC_002516.2.879194.p Protein 2e-28 44
Pfl01_3354 YP_349083.1 two component transcriptional regulator AE015929.1.gene1106. Protein 3e-23 41
Pfl01_3354 YP_349083.1 two component transcriptional regulator BAC0308 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_3354 YP_349083.1 two component transcriptional regulator VFG0473 Protein 2e-35 49
Pfl01_3354 YP_349083.1 two component transcriptional regulator VFG0596 Protein 5e-29 45
Pfl01_3354 YP_349083.1 two component transcriptional regulator VFG1390 Protein 7e-33 41