|
Name : Pfl01_3174 (Pfl01_3174) Accession : YP_348903.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Virulence Product : type II secretion system protein E (GspE) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3654142 - 3655548 bp Length : 1407 bp Strand : - Note : - DNA sequence : ATGAGCGCATTGCCTTACGCCTGGGCCAAGGCGCAGCGGATTCTGCTGCGCGACGGCGTGCTGACGGTGTGCCCGTCGAC GCCGGGCTGGTCGATCAGCGAGGTGCGCCGGCAGTTCGGCGCGGCCAGGCTTGAGCGGGTGCGCGATGACGAACTCGACG GCTTGCTCGCCACGGCTTACGCCGACACTGGCAGCGCGGCGGCGGTGGTCGGTGCGGCGGAAAACGAAGTCGACCTCGAT CGCCTGATGCAGGACATGCCGGAAATCACTGACCTGCTCGACACCCAGGACGGCGCGCCGGTGATCCGCATGATCAACGC CTTGCTCACCCAAGCGGCGCGGGACGAGGCCAGCGACATTCACATCGAACCGTTCGAAACCCATTCGGTGGTGCGCTACC GGGTCGATGGCACCCTGCGCGACGTGGTCTCGCCGCGCAAGGCGTTGCACGGTGCGCTGGTGTCGCGGATCAAGATCATG GCCCAGCTCGATATCGCCGAAAAACGCCTGCCGCAGGACGGGCGCATTGCGTTGCGCGTAGCAGGGCGGCCGATCGACAT TCGCGTATCGACCGTGCCGACCGGCCATGGCGAGCGCGTGGTGATGCGTCTGCTGGACAAGCAGGCCGGGCGCCTGCATC TGGAAACCCTGGGCATGGACGCGCAGGTGCTGGCCAAACTCGATCACCTGATCCGCCAGCCCCACGGCATTGTGCTGGTC ACCGGCCCGACCGGCAGCGGCAAGACCACGAGTTTGTATGCGGCACTGGCGCGGCTCGATGCGAGCACCAGCAACATCCT CACCGTGGAAGACCCGGTGGAGTACGACCTGCCGGGCATCAGCCAGATTCAGGTCAACGCCAAGATCGACATGACTTTTG CCCTCGCGCTGCGTGCCATTTTGCGCCAGGACCCGGACATCATCATGATCGGCGAGATCCGCGACCTCGAAACCGCGCAG ATCGCGGTGCAGGCGTCGCTGACCGGTCACCTGGTGCTCGCGACCCTGCACACCAACGACGCGGTCTCGGCGGTCAACCG CTTGATCGACATGGGCGTCGAGCCGTTTTTGCTGGCCTCGTCAATGCTCGGGGTGTTGGCCCAGCGTTTGGTGCGGCGCC TGTGCAATCAGTGCAAACAGGAAGATCCGGCCACGCCCGGCACCTGGCGCCCGGTCGGTTGCGCGGCGTGCAACCACACC GGTTACAGCGGCCGGACCGGCATTCATGAATTGTTCTGCATCGATGACGACATCCGCACGCTGATTCACCAAGGGGCAGG GGAGCAGGCTTTGCGCGCGGCGGCGAGCAAGGCCGGGATGTTCAGCCTGCGTGAGGACGGCGAGCGCTGGATTCGCAGCG GTGCCACAGCCCCTGAAGAAATCCTTCGCGTGACACGGGACGCCTGA Protein sequence : MSALPYAWAKAQRILLRDGVLTVCPSTPGWSISEVRRQFGAARLERVRDDELDGLLATAYADTGSAAAVVGAAENEVDLD RLMQDMPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPFETHSVVRYRVDGTLRDVVSPRKALHGALVSRIKIM AQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLHLETLGMDAQVLAKLDHLIRQPHGIVLV TGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNAKIDMTFALALRAILRQDPDIIMIGEIRDLETAQ IAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSMLGVLAQRLVRRLCNQCKQEDPATPGTWRPVGCAACNHT GYSGRTGIHELFCIDDDIRTLIHQGAGEQALRAAASKAGMFSLREDGERWIRSGATAPEEILRVTRDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-108 | 57 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-108 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pfl01_3174 | YP_348903.1 | type II secretion system protein E (GspE) | VFG0182 | Protein | 6e-119 | 61 |
| Pfl01_3174 | YP_348903.1 | type II secretion system protein E (GspE) | VFG2048 | Protein | 8e-108 | 57 |
| Pfl01_3174 | YP_348903.1 | type II secretion system protein E (GspE) | VFG1876 | Protein | 2e-114 | 50 |
| Pfl01_3174 | YP_348903.1 | type II secretion system protein E (GspE) | VFG2426 | Protein | 2e-76 | 48 |
| Pfl01_3174 | YP_348903.1 | type II secretion system protein E (GspE) | VFG0112 | Protein | 1e-77 | 44 |
