Gene Information

Name : Pfl01_3117 (Pfl01_3117)
Accession : YP_348846.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 3575317 - 3576900 bp
Length : 1584 bp
Strand : -
Note : -

DNA sequence :
ATGCGTGAACATCTGATCGAAATACGCGACCTGCGGGTGGCGTTCAAAGGGCAGGAAGTGGTGCACGGCATCAACTTCGA
CATTTGCCCGGGCGAATGCCTGGCGCTGGTGGGCGAGTCGGGTTCCGGCAAGTCGGTGACGGCCCACAGCATCCTGCAAC
TGCTGGACCCGAACATCACCCGGATCGACGGCAGCATCCGCTACGGCGGCGAAGAGTTGCTGGGTGTGCACGAGCGCTAT
CTGCGGCAACTGCGCGGCAACCGCATCGCGATGATTTTTCAGGAGCCGATGAGTTCTCTAAATCCGTTGCACAGCATCGA
GCGGCAACTCGGCGAAAGCCTGGCGCTGCACAGAGGCCTGGCCGGCGCGGCGGCGCGCAAACGGATTCTGGAGCTGTTGG
AGCTGGTGGGCATTCAACGACCGCGCGAGCGGCTGAAAGCGTATCCGCATCAGCTCTCCGGCGGGCAGCGGCAGCGGGTG
ATGATCGCGATGGCGCTGGCGTGCGAACCGCAGTTGCTGATCGCCGATGAGCCGACCACAGCCCTCGATGTCACCGTGCA
ACGCAAGATTCTGTTGCTGCTCAAGGAACTGCAACAACGTCTGGGCATGGCGCTGCTGATTATCAGCCATGACTTGAATC
TGGTGCGCACCATCGCCCAGCGGGTGGCGGTGATGCGTGCGGGTGAGATCGTCGAACAGGCAAGCTGCGAGCAGTTGTTC
CGTGCGCCGCAGCATCCCTACAGCATCGAGTTGCTCAACGCCGAACCCGGCGGCGCGGCGCTGTGCCGGGATGCGGCGGA
GGATTTGCTCGAAGTTCGCGATCTGCATGTGCGTTTTCCGCTGGGAGGCGGCTGGCTGCGGGCCAAGTCGTATCTGCACG
CGGTCAATGGCATCGATCTGGACCTGCAGCGGGGCAAGACTTTGGGCATTGTTGGTGAGTCGGGCTCGGGTAAATCCACG
CTGGGTCAGGCGATCCTGCGCCTGATCGATGCCGACGGCAGCATCCGCTTCAACGGCGAGGCGCTTGAGCAACTGAGCGG
CAAACAATTGCGTCCGTTGCGCAAACGCCTGCAAGTGGTGTTTCAGGATCCGTTCGGCAGCCTCAGCCCGCGCTTGTGCG
TGGAGCAGATCATTGCCGAGGGTTTGCAGGTGCACAGTGACTTGGATGCGCAGGCGCGCGAGCAGGCGGTGATTGATGTA
CTGAAGGAAGTCGGGCTCGATCCGGCGACGCGTCATCGCTATCCCCACGAGTTTTCCGGCGGGCAGCGACAACGCATCGC
CATCGCTCGGGCGCTGGTGCTCAAGCCGGATCTGATCCTGCTCGATGAGCCGACGTCGGCCCTGGATCGCACGGTGCAGA
AACAGATCGTCGCGCTGTTGCGCCGGTTGCAGGAGGAGCACGGGCTGACTTATCTGTTCATCAGCCATGACCTGGCGGTG
GTGCGGGCGCTGGCTCACGATCTGATCGTGATGAAGGATGGCGAAGTGGTGGAGCGTGGCGAAACGGCCGGGTTGTTTGA
TTCGGCCCGGCACCCGTACACACGGGAATTGCTGGCGGCATCGTTTGCCGGTGTGAACGCCTGA

Protein sequence :
MREHLIEIRDLRVAFKGQEVVHGINFDICPGECLALVGESGSGKSVTAHSILQLLDPNITRIDGSIRYGGEELLGVHERY
LRQLRGNRIAMIFQEPMSSLNPLHSIERQLGESLALHRGLAGAAARKRILELLELVGIQRPRERLKAYPHQLSGGQRQRV
MIAMALACEPQLLIADEPTTALDVTVQRKILLLLKELQQRLGMALLIISHDLNLVRTIAQRVAVMRAGEIVEQASCEQLF
RAPQHPYSIELLNAEPGGAALCRDAAEDLLEVRDLHVRFPLGGGWLRAKSYLHAVNGIDLDLQRGKTLGIVGESGSGKST
LGQAILRLIDADGSIRFNGEALEQLSGKQLRPLRKRLQVVFQDPFGSLSPRLCVEQIIAEGLQVHSDLDAQAREQAVIDV
LKEVGLDPATRHRYPHEFSGGQRQRIAIARALVLKPDLILLDEPTSALDRTVQKQIVALLRRLQEEHGLTYLFISHDLAV
VRALAHDLIVMKDGEVVERGETAGLFDSARHPYTRELLAASFAGVNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 1e-95 44
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-79 42
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-79 42
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 7e-79 42
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 7e-79 42