Gene Information

Name : Pfl01_3064 (Pfl01_3064)
Accession : YP_348793.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : Phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3504962 - 3506278 bp
Length : 1317 bp
Strand : -
Note : -

DNA sequence :
ATGTCGCGCACAACTGCTCCGCTTACCGACGCTGCTTGCCGTTTAGCAAGGCCAACGGACCGTCCCTACAAGCTTTTCGA
CGGCGACGGTCTCTATCTCCTAATTCAACCCAATGGCCGTAAAGGCTGGCGTCTCAGGTATGTAAAGCCTGACGGCCGGG
AGGGGTTGACCTCCCTCGGCAGCTATCCCGTGATTGGCCTGGCCGAAGCTCGCCAGAAGCGTTTAGATGCGAAGCGAATG
CTCGCAGACGGCATTGATCCCGTCGAGAGCAAGCGTAAAGCCAAAACGGAAGATGCTGTTAACGGCCGTACTTTTGAAAG
CGTTGCGTTGGACTGGCACAAGAACATGTCGGCCAGATGGACACTCGACCATTCCAAAAATGTGTTCAACCGTCTGAATA
ACTATGTGTTCCCGTTTATCGGTGCTCGCGCGATTGCTGATCTCGATACTTATGATCTGATGCAACCTTTGGAGGCGATC
AGAAAACGAGGAACAATTGACGTCGCCTTAAGGGTACAAAGATACCTGCAAAGTATTATGCGTGAGGCAAAACGCCTTCG
TCTTATTCCGATGAACCCTGCGTACGATCTTCAGGGTTTGATCAAAGCGCCGCGAGTCTCCCATCGGCCTACATTGCCCC
TGTCACGCCTGCCTGAATTGCTGGCACGAATCTATGCCTACAAGGGCCGAGAGCTGACCCGGCTAACGCTCATGCTCTCG
CTGCACGTGTTTGTTCGCTCGAGTGAGTTACGTTTCGCTCGTTGGTGTGAGTTCGACCTCAAGCGTTGCGTATGGGAGAT
CCCGGATACTCGGCCGGAGCTGGAGGACGTACGCCATTCAACACGGGGGACGAAAATGGCGGGCGATGTTCATCTTGTGC
CTTTATCGCCGCAAGTTGTGGCCGTGCTTGAACAGATCCACACCCTCACTGGCGCATTCGACCTGGTGTTTGCCGGTGAT
GCTAGGGCCTGGAAGCCGATGTCAGAAAACACCGTGAACAAAGCGTTGCGCACCATGGGATACGACACGAAGACAGAGAT
TTGTGGTCACGGATTTCGCTCAATGGCCTGTAGCGCACTGATCGAGTCAGGTCTGTGGTCTGAGACGGCCATCGAAAGGC
AAATGAGTCATAGAGAGCGCAACAGCGTTCGAGCTGCCTACATTCACAAGGCAGAGTTCATTGAGGAGCGTCGGTTGATC
ATGAACTGGTGGAGCCGGTACCTTGCGGCAAATCTTCAGGAGCATGTCACGCCTCATGAGTTTGCGAATCAGGTCGGCGA
GAATGTCACTCGATTAAAAGTAAACGTGGCGCAATGA

Protein sequence :
MSRTTAPLTDAACRLARPTDRPYKLFDGDGLYLLIQPNGRKGWRLRYVKPDGREGLTSLGSYPVIGLAEARQKRLDAKRM
LADGIDPVESKRKAKTEDAVNGRTFESVALDWHKNMSARWTLDHSKNVFNRLNNYVFPFIGARAIADLDTYDLMQPLEAI
RKRGTIDVALRVQRYLQSIMREAKRLRLIPMNPAYDLQGLIKAPRVSHRPTLPLSRLPELLARIYAYKGRELTRLTLMLS
LHVFVRSSELRFARWCEFDLKRCVWEIPDTRPELEDVRHSTRGTKMAGDVHLVPLSPQVVAVLEQIHTLTGAFDLVFAGD
ARAWKPMSENTVNKALRTMGYDTKTEICGHGFRSMACSALIESGLWSETAIERQMSHRERNSVRAAYIHKAEFIEERRLI
MNWWSRYLAANLQEHVTPHEFANQVGENVTRLKVNVAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-169 76
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-100 53
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-100 53
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-100 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-100 53
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-101 52
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 6e-102 52
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-103 52
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-103 52
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 8e-102 52
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-102 52
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-102 52
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-102 52
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 7e-101 52
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-102 52
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-102 52
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-102 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 6e-68 51
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-79 51
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 5e-95 51
int AAK00456.1 Int Not tested SHI-1 Protein 9e-96 51
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-102 51
int CAC81896.1 integrase Not tested LEE II Protein 9e-95 51
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-102 51
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-102 51
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-101 51
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-102 51
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-102 51
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-102 51
int YP_002346908.1 integrase Not tested HPI Protein 7e-92 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 7e-92 50
int2 NP_993013.1 integrase Not tested HPI Protein 7e-92 50
int CAA08754.1 integrase Not tested HPI Protein 2e-92 50
int CAA21384.1 - Not tested HPI Protein 7e-92 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-92 50
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-90 49
int CAB59974.1 integrase Not tested HPI Protein 2e-92 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pfl01_3064 YP_348793.1 Phage integrase VFG0626 Protein 2e-103 52
Pfl01_3064 YP_348793.1 Phage integrase VFG1693 Protein 6e-103 52
Pfl01_3064 YP_348793.1 Phage integrase VFG1536 Protein 3e-95 51