|
Name : Pfl01_3001 (Pfl01_3001) Accession : YP_348730.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 3442472 - 3444439 bp Length : 1968 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGTCTCTTCCTCTGCGAGAAACCATCCCAAGGTCGTGACATCGCCAAGGTTCTCGGGGCCACTCGGCGTGGTGACGG TTGCCTGATCGGCACCGACTCAACCGTCACCTGGTGTATCGGTCACCTGCTGGAGACGGCCCCACCTGAAGCTTATGGTG CTCAGTACAAATCCTGGTCGCTGGATCATCTACCGATCATTCCCGCGCAGTGGCAGGTCGAGGTCAAATCCAAGACCGCC GCGCAGTTCAAAATCATCAAACGCCTGCTGAGTGAAGCCTCAAGTGTTGTCATCGCGACCGACGCCGATCGCGAAGGTGA AATGATTGCCCGCGAGCTGCTTGAACTCTGCAGGTATCGAGGCCCCGTTCTGCGCCTCTGGTTGTCCGCCCTCAACGAGG CGTCTATTCGCAAAGCCTTGTCCTCGCTGAAGTCCGGTCAGGTGACTTTCCCGCTCTATCACTCGGCGCTCGCCCGCAGC CGTGCCGACTGGCTGATCGGCATGAACCTCAGTCGTTTGTTTACCCTTCTCGGTCGGCGAGCAGGTTACGACGGCGTTTT GTCAGTGGGGCGCGTCCAGACACCCACTTTACGTCTGGTGGTCGATCGGGATCGTGCGATTGCCAGCTTCGTCCCGGTGC CTTACTGGACCGTTGACGTGCACCTATCGTCGATGGGCCAGCGATTCATCGCGTCGTGGTTACCACCACGTTCAGGACGG GACGAAGCGGGGCGTTGCCTGCAACAGGCGCTCGCCCATCACGCGGTCCAAACAATCACCGGCGAGAAGTCCGCCACGGT ACTCTCGTTGCAAACTGAGCAGCTCCGAGAACCGCCGCCCCTGCCCTTCGACCTGAGCACGTTGCAAGAAGTCTGCTCGC GTAAGCTGGGGCTCGGTGTTCAGGAAACCCTGAACATCGCCCAAGCCCTGTATGAAACCCACAAAGCCACCACCTACCCG CGCAGCGATTGCCGCTATTTGCCAGAGAGCATGTTCAACGAGGCACCCGCGGTACTCGACGCCCTGCTCAAAACGGATCC TGCACTCAGACCTGCATTCGGGAGCCTCGATCGATCATTGCGCGCCCGCGTATGGAACAATGCTAAGGTCACCGCGCACC ACGGCATCATTCCCACCACCGAGCCCGCAAATTTGGTGCGGATGTCCGAACAAGAACGCCAAGTCTACGAACTGATCCGC AGCCACTACCTGGCGCAGTTTCTTCCGCATCATGAGTTTGATCGAACCCAGGTCGAACTGGAATGTAGCAAAGAACGTTT GACCGCTGTCGGCAAACAGATCCTGATCCAGGGCTGGAAAGGCTTGCTCACCGAAAACACCGAGGACGATGAGCCCAGTC AAAAGCACCAAGTATTGCCAGTCCTGCAACAGGGTACTCAGTGCGCCGTAAACGACGTCGAACTCAAGTCAATGCGCACC GTCGCTCCCAAACCGCTCACCGAGGGCGATCTGATCAAGGCGATGAAAAACGTCGCCAAGCTGGTCAACGACCCACGCCT GAAACAGAAACTTCGGGACACCACCGGTATCGGTACCGAAGCCACGCGAGCCGGCATTATCAAAGGGTTGGTTGATCGCG GTTATTTGCTGAAGAAAAAACGCGCCTTAATGGCCTCCGCCGCGGCCCATACCCTGATCGAGGCGGCACCGACAGCAGTC GCCGATCCGGGTATGACCGCAATCTGGGAACAGGCGCTGGACGAAATCGAAGCGGGACGCCTGACCCTGGATGCGTTCGT TGCCAAGCAGGCGAACTGGATTGCGCAGTTGGTCGCACACTACCGCTCGCACACTTTGGCAATAGCGGTCGAAACGAGCC CGAGCTGCCCTATGTGCAACGCCTCAATGCTCAGGCGAAAGGGAAAATCAGGGCCGTTCTGGTCGTGCTCCTGCTACCCG GATTGCAAGGGCACTGTGTCGATCAGTAAAGATACGCGTCGCTCATGA Protein sequence : MRLFLCEKPSQGRDIAKVLGATRRGDGCLIGTDSTVTWCIGHLLETAPPEAYGAQYKSWSLDHLPIIPAQWQVEVKSKTA AQFKIIKRLLSEASSVVIATDADREGEMIARELLELCRYRGPVLRLWLSALNEASIRKALSSLKSGQVTFPLYHSALARS RADWLIGMNLSRLFTLLGRRAGYDGVLSVGRVQTPTLRLVVDRDRAIASFVPVPYWTVDVHLSSMGQRFIASWLPPRSGR DEAGRCLQQALAHHAVQTITGEKSATVLSLQTEQLREPPPLPFDLSTLQEVCSRKLGLGVQETLNIAQALYETHKATTYP RSDCRYLPESMFNEAPAVLDALLKTDPALRPAFGSLDRSLRARVWNNAKVTAHHGIIPTTEPANLVRMSEQERQVYELIR SHYLAQFLPHHEFDRTQVELECSKERLTAVGKQILIQGWKGLLTENTEDDEPSQKHQVLPVLQQGTQCAVNDVELKSMRT VAPKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLVDRGYLLKKKRALMASAAAHTLIEAAPTAV ADPGMTAIWEQALDEIEAGRLTLDAFVAKQANWIAQLVAHYRSHTLAIAVETSPSCPMCNASMLRRKGKSGPFWSCSCYP DCKGTVSISKDTRRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 66 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 65 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 64 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-174 | 52 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-174 | 52 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-174 | 52 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-160 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-164 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 1e-126 | 41 |
