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Name : Pfl01_2188 (Pfl01_2188) Accession : YP_347920.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Virulence Product : ornithine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.17 Position : 2471552 - 2473807 bp Length : 2256 bp Strand : + Note : - DNA sequence : ATGTACAAAGATTTGAAGTTCCCGGTGTTGATCGTCCACCGCGACATCAAGGCCGACACGGTTGCCGGTGACCGCATCCG CGGCATTGCCCGAGAGCTGGAGCTGGAAGGTTTCAGTATCGTTTCGGCCACCGACTACACCGAAGGCCGGCTCGTGGCGT CGACCCACCATGGTCTGGCGTGCATGCTGATCGCCGCGGAAGACGCCAGCACCAACTCCCATCTGTTGCAGAACATGGCC GAACTGATCGGTCTGGCCCGGGTGCGGGCGCCGGATCTGCCGATCTTTGCACTCGGCGAGCAAGTAACCCTGGAAAACGC CCCGGCCGATGCGATGGCCGAACTCAACCAGTTACGCGGCATTCTCTACCTGTTCGAAGACACCGTGCCGTTTCTCGCCC GACAAGTGGCGCGGGCAGCGCGCAAATACCTGGACGGCCTGTTGCCGCCATTCTTCAAGGCGCTGGTCCAGCACACCGCC GATTCCAACTATTCCTGGCACACCCCCGGTCACGGCGGCGGGGTGGCCTATCACAAGAGTCCGGTGGGGCAGGCGTTTCA TCAGTTCTTCGGGGAAAACACCCTGCGCTCCGATTTATCGGTCTCGGTGCCGGAGCTGGGTTCCTTGCTCGATCACACCG GGCCGCTGGCCGAGGCGGAAGCGCGGGCCGCGCGCAATTTCGGCGCCGATCACACCTTTTTCGTGATCAATGGCACCTCG ACCGCCAACAAGATCGTCTGGCACTCGATGGTCGGGCGCGATGATCTGGTGCTGGTGGATCGCAACTGCCACAAGTCGGT GCTGCACGCGATCATCATGACCGGCGCGATTCCGCTGTACCTGTGCCCGGAGCGCAACGAGCTGGGGATCATCGGGCCGA TCCCGCTCAGTGAATTCAGTCGTGAATCGATCCAGGCCAAGATCGACGCCAGCCCGTTGACCAAGGGCCGCGAACCGAAA GTCAAACTGGCGGTGATCACCAACTCCACTTACGACGGCCTCTGCTACAACGCCGAGCTGATCAAGCAGAGCCTGGGCAA CAGTGTCGAAGTGTTGCATTTCGACGAGGCCTGGTACGCCTACGCCGCGTTTCACGAATTCTTTGCCGGCCGTTACGGCA TGGCCACCTCGCGCAGCGAGGACAGTCCGCTGGTGTTTACCACCCACTCCACCCACAAACTGTTGGCGGCGTTCAGTCAG GCCTCGATGATTCATGTTCAGGACGGTGGGGCGCGGCAGCTGGATCGCGACCGGTTCAACGAAGCGTTCATGATGCACAT CTCGACGTCGCCGCAGTACAGCATCATTGCTTCGCTGGACGTCGCCTCGGCGATGATGGAAGGCCCGGCCGGACGCTCGC TGCTGCAGGAAACCTTCGACGAAGCCCTGAGCTTTCGCCGGGCCTTGGCCAATCTGCGTCAGCACATCGCCGCTGACGAT TGGTGGTTCTCGATCTGGCAGCCGCCGGGTGTCGAGGGCATCGACCGGGTGCAGACCGAGGACTGGCTGCTGCAACCCGA TGCGGACTGGCACGGTTTCGGCGAGGTCAGCGACGACTACGTACTGCTCGACCCGATCAAGGTCACCCTGGTCATGCCGG GCCTGACCGCCGGCGGCGCTTTGAGCGACAAGGGCATCCCGGCGGCCGTGGTCAGCCGTTTCCTCTGGGAGCGCGGGCTG GTGGTGGAGAAAACCGGTCTGTATTCATTTCTGGTGCTGTTCTCCATGGGCATCACCAAGGGCAAGTGGAGCACGCTCCT GACCGAACTGCTGGAGTTCAAGCGCAGCTACGACGCCAACATCAGTCTCGACACCTGCCTGAAGTGTGTCGAGCAGGAAG ATCCTGTGCGCTATCGCGGCATGGGCCTGCGCGATTTGTGCGATCAGCTTCACGCCTGCTATCGCAGCAACGCGACCGCC AGACACCTCAAGCGCATGTACACGGTGCTGCCGGAAATCGCGATGAAACCGGCCCACGCTTACGATCAATTGGTGCGCGG CGAAGTCGAGGCGGTGCCGATCGATGAGCTGGAAGGCCGGGTGGCGGCGGTGATGCTGGTGCCGTACCCGCCGGGCATTC CGCTGATCATGCCCGGCGAACGGTTTACCGAATCCACGCGCTCGATCATCGAATACCTCAGGTTTGCCCGCACGTTCGAC ACAACGTTTCCGGGGTTCGTGGTCGATGTGCACGGTCTGCAACACGAAGATGAGGGCAATGGGCGGCACTACACCGTCGA TTGCGTCAAGGAATGA Protein sequence : MYKDLKFPVLIVHRDIKADTVAGDRIRGIARELELEGFSIVSATDYTEGRLVASTHHGLACMLIAAEDASTNSHLLQNMA ELIGLARVRAPDLPIFALGEQVTLENAPADAMAELNQLRGILYLFEDTVPFLARQVARAARKYLDGLLPPFFKALVQHTA DSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS TANKIVWHSMVGRDDLVLVDRNCHKSVLHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSRESIQAKIDASPLTKGREPK VKLAVITNSTYDGLCYNAELIKQSLGNSVEVLHFDEAWYAYAAFHEFFAGRYGMATSRSEDSPLVFTTHSTHKLLAAFSQ ASMIHVQDGGARQLDRDRFNEAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQETFDEALSFRRALANLRQHIAADD WWFSIWQPPGVEGIDRVQTEDWLLQPDADWHGFGEVSDDYVLLDPIKVTLVMPGLTAGGALSDKGIPAAVVSRFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDANISLDTCLKCVEQEDPVRYRGMGLRDLCDQLHACYRSNATA RHLKRMYTVLPEIAMKPAHAYDQLVRGEVEAVPIDELEGRVAAVMLVPYPPGIPLIMPGERFTESTRSIIEYLRFARTFD TTFPGFVVDVHGLQHEDEGNGRHYTVDCVKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 1e-128 | 43 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 7e-128 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pfl01_2188 | YP_347920.1 | ornithine decarboxylase | VFG1670 | Protein | 6e-129 | 43 |
