Gene Information

Name : Pfl01_2178 (Pfl01_2178)
Accession : YP_347910.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 2459275 - 2460885 bp
Length : 1611 bp
Strand : -
Note : -

DNA sequence :
ATGAATCAGGACAATCTGATCGAAATCCGCGACCTGGCCGTCGAATTCGGTTTCGGCGAGCGTGTGCACCGGGTCGTGGA
AGGCGTGAGTTTCGACATCAAGCGCGGTGAAACCCTCGCGTTGGTCGGCGAATCCGGCTCGGGCAAATCGGTGACCGCGC
ACTCGATCCTGCGCTTGCTGCCCTACCCGCTGGCGCGGCATCCGGCCGGCAGCATCAATTATTCCGGGCAGAACCTGCTG
GAACTGGGCGAAAAGACCATCCGTCACATTCGCGGCAACCGGATCGCGATGATCTTTCAGGAGCCGATGACCTCGCTCAA
CCCGCTGCACTCGATCGAGAAGCAGATCAACGAGGTGCTGGGTATCCACAAGGGCCTGACCGGCAAAGTCGCGACCAAGC
GCACGCTGGAGTTGCTGGAGATGGTCGGCATCCCCGAGCCGCACAAGCGCCTCAAGGCCCTGCCCCACGAATTGTCCGGC
GGCCAGCGTCAGCGGGTGATGATCGCCATGGCCCTGGCCAACGAGCCGGAACTGCTGATCGCCGACGAACCGACCACTGC
GCTGGACGTGACCGTTCAGCTGAAAATCCTCGACCTGCTCAAGGAATTGCAGGCCCGATTAGGCATGGCGCTGTTACTGA
TCAGTCACGATTTGAACCTCGTGCGAAGAATTGCGCATCGTGTATGTGTCATGCAGCGCGGTTGCATCGTCGAACAGGCA
TCGTGCGAAGAGCTGTTCCGTTCGCCGCAGCATCCGTACACTCGGGAACTGCTTGGCGCAGAGCCCAGCGGAGGCCCGGC
GAGCAATAAAATCGGGGCGCCGCTGCTTGAAGTCGAGGATCTGAAAGTCTGGTTCCCGATCAAGAAAGGCCTGCTCAAGC
GCACGGTGGATCACGTCAAGGCAGTGGACGGCATCAATTTCAGCCTGCCTCAGGGTCAGACCCTGGGGATCGTGGGGGAA
AGCGGTTCCGGCAAATCCACCCTGGGTCTGGCGATCCTGCGGTTGATCGGCAGCAAAGGTGCGATCCGTTTTGAAGGCAA
GCAGCTAGACTGCCTGACGCAAAGCGAAGTCCGGCCGTTGCGCCGGGAGATGCAGGTGGTGTTTCAGGATCCGTTTGGCA
GCCTGAGCCCGCGAATGTGCGTGAATGACATCGTTGGTGAAGGCCTGCGGATCCACAAGATGGGCACCGCTGCCGAGCAG
GAAGCGGCGATTATTGCGGCATTGAAGGAGGTAGGTCTGGATCCGGAAACCCGGCACCGCTACCCCCACGAATTTTCCGG
TGGGCAACGGCAGCGAATTGCCATAGCCCGGGCCTTGGTGCTCAAACCGGCGCTGATCCTGCTGGACGAGCCGACTTCGG
CCCTCGACCGGACGGTGCAGCGGCAAGTGGTGGAGCTGTTGCGCTCACTGCAAGCCAAGTACAACCTGACGTATTTGTTC
ATCAGCCATGACCTGGCTGTCGTCAAAGCGCTGAGCCACCAGCTGATGGTGGTCAAGCATGGCCAAGTGGTCGAACAGGG
AGACGCGCAAAGTATCTTTGCCGCCCCCCAACATTCGTATACACAGCAGTTGCTGGAGGCCGCTTTCCTGGCACCAGCCA
CTGCGCAATAA

Protein sequence :
MNQDNLIEIRDLAVEFGFGERVHRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPAGSINYSGQNLL
ELGEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLTGKVATKRTLELLEMVGIPEPHKRLKALPHELSG
GQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILDLLKELQARLGMALLLISHDLNLVRRIAHRVCVMQRGCIVEQA
SCEELFRSPQHPYTRELLGAEPSGGPASNKIGAPLLEVEDLKVWFPIKKGLLKRTVDHVKAVDGINFSLPQGQTLGIVGE
SGSGKSTLGLAILRLIGSKGAIRFEGKQLDCLTQSEVRPLRREMQVVFQDPFGSLSPRMCVNDIVGEGLRIHKMGTAAEQ
EAAIIAALKEVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQAKYNLTYLF
ISHDLAVVKALSHQLMVVKHGQVVEQGDAQSIFAAPQHSYTQQLLEAAFLAPATAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 3e-78 42
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 42
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 42
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 42
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 4e-98 42