Gene Information

Name : fliP (Pfl01_1549)
Accession : YP_347281.1
Strain : Pseudomonas fluorescens Pf0-1
Genome accession: NC_007492
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1736512 - 1737270 bp
Length : 759 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGGGTGCGTTGCGCATCGTCTTGACCCTGGCCCTGTTGCTGGCCGCGCCGCTGGCATTCGCCGCCGATCCGTTGTCGAT
CCCGGCGATCACCCTGGGCACCAACGCCGAGGGCGCGCAGGAGTATTCGGTCAGCCTGCAGATCCTGCTGATCATGACGG
CGCTGAGCTTCATTCCGGCCGCCGTTATCCTGATGACCAGTTTCACCCGGATCATCATCGTCTTCTCGATCCTGCGTCAG
GCCCTGGGCCTGCAGCAGACACCGTCGAACCAGATCCTCACCGGCATGGCGCTGTTCCTGACGCTGTTCATCATGGCGCC
GGTGTTCGATCGCGTGAACAACGATGCCTTGCAGCCGTACCTCGCGGAAAAGCTGACGGCCCAGCAGGCAGTGGAAAAGG
CTCAGGTGCCGATCAAGGACTTCATGCTCGCCCAGACCCGCTCCAGCGATCTGGAGCTGTTCGTGCGCCTGTCCAAGCGT
ACCGACATCGCGACGCCGGATGCTGCGCCGCTGACCATTCTGGTGCCGGCCTTCGTGACGTCTGAACTGAAGACCGCGTT
CCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGGCGAGCGTGCTGATGGCGATGGGTATGA
TGATGCTGTCGCCGCTGATCATTTCCCTGCCGTTCAAAATCATGCTGTTCGTGCTGGTGGATGGCTGGGCGCTGATCATC
GGCACCCTGGCCAGCAGTTTCGGAGGTGTATCGCCATGA

Protein sequence : 
MGALRIVLTLALLLAAPLAFAADPLSIPAITLGTNAEGAQEYSVSLQILLIMTALSFIPAAVILMTSFTRIIIVFSILRQ
ALGLQQTPSNQILTGMALFLTLFIMAPVFDRVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDLELFVRLSKR
TDIATPDAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALII
GTLASSFGGVSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-33 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-30 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-30 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-30 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 7e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 7e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-33 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-30 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-31 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-22 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-22 41
escR AAL57527.1 EscR Virulence LEE Protein 5e-32 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-32 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-32 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-32 41
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-32 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-32 41
escR AAC31528.1 L0049 Virulence LEE Protein 5e-32 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-32 41
escR AAC38369.1 EscR Virulence LEE Protein 4e-31 41
escR AAK26700.1 EscR Virulence LEE Protein 5e-32 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-91 84
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-68 61
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-65 60
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-62 59
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0394 Protein 9e-35 43
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-33 42
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0188 Protein 4e-35 41
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-34 41
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0715 Protein 2e-31 41
fliP YP_347281.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-32 41