|
Name : Pfl01_1134 (Pfl01_1134) Accession : YP_346866.1 Strain : Pseudomonas fluorescens Pf0-1 Genome accession: NC_007492 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1310403 - 1312985 bp Length : 2583 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGAATAAAGCCGTCTCCGACCTGTCCTCCCACACCCCGATGATGCAGCAGTACTGGCGCCTGAAGAATCAGCACCCGGA CCAGCTGATGTTCTACCGCATGGGCGACTTCTACGAGATCTTCTACGAAGACGCGAAGAAGGCGGCTAAGTTGCTGGACA TCACCCTGACCGCGCGCGGGCAGTCGGCGGGTCAGGCGATTCCGATGTGCGGGATTCCGTATCACGCGGCGGAAGGTTAT CTGGCGAAGCTGGTCAAGCTCGGCGAGTCGGTGGTGATCTGCGAGCAGGTCGGCGACCCGGCCACCAGCAAAGGCCCGGT GGAACGTCAGGTGGTGCGGATCATCACCCCCGGTACGGTCAGCGACGAAGCGTTGCTGGATGAGCGCCGCGACAACCTGA TCGCGGCGGTGCTGGGCGACGAGCGCCTGTTCGGTCTGGCGGTGCTGGACATCACCAGCGGCAACTTCACCGTGCTGGAG ATCAAGGGCTGGGAAAACCTGTTGGCGGAGCTGGAGCGGGTCAACCCGGTCGAGTTGCTGATCCCGGATGACTGGCCGAA GGATCTGCCGGCGGAAAAACGCCGTGGCGTACGTCGTCGTGCACCGTGGGATTTCGAACGTGATTCGGCGCTGAAAAGTC TCTGCCAGCAATTCTCCACCCAAGACCTCAAAGGTTTTGGCTGCGAAACCCTGACCCTGGCCATCGGCGCCGCCGGTTGC TTGCTGGCGTACGCCAAGGAAACCCAGCGCACCGCCCTGCCCCATTTGCGCAGCCTGCGCCATGAACGGCTGGACGACAC CGTGGTGCTGGACGGCGCCAGCCGCCGTAACCTCGAACTTGACACTAACCTGGCCGGTGGCCGCGACAACACCCTGCAAT CGGTGGTCGACCGTTGCCAGACCGCGATGGGCAGCCGCTTGCTGACCCGATGGCTCAACCGTCCGCTGCGCGATCTGACC GTGCTGCTGGCTCGCCAGACCTCGATCACTTGCCTGCTCGACCGCTATCGCTTTGAAAACCTGCAACCGCAGCTCAAGGA AATCGGCGACATCGAGCGTATCCTGGCGCGGATCGGCCTGCGCAATGCCCGCCCTCGCGACCTCGCTCGCCTGCGCGACG CGCTCGGTGCGCTGCCTGAACTGCAAGTGGCGATGACCGATCTCGAGGCGCCGCACCTGCAACGTCTGGCGACCACCACC AGCACTTATCCGGAACTGGCGGCGCTGCTGGAAAAAGCCATCATCGACAACCCGCCGGCGGTGATCCGTGACGGCGGCGT GCTGAAAACCGGTTACGACAGCGAGCTCGACGAGCTGCAATCGCTGAGCGAGAACGCCGGCCAGTTCCTGATCGATCTGG AAGCCCGGGAAAAGGCCCGTACCGGCCTCGCCAACCTGAAAGTCGGCTACAACCGCATTCACGGCTACTTCATCGAGTTG CCGAGCAAGCAGGCTGAATCAGCGCCGGCAGACTACATCCGTCGTCAGACCCTCAAGGGTGCCGAGCGCTTCATCACCCC GGAACTGAAAGAGTTCGAAGACAAGGCGTTGTCGGCCAAGAGCCGCGCCCTGGCTCGCGAGAAAATGCTTTATGAAGCGC TGCTGGAAGATTTGATCAGCCAGCTGCCGCCGCTGCAGGACACCGCAGGTGCCCTGGCCGAGCTGGACGTGCTGAGCAAC CTCGCCGAACGTGCGCTGAATCTCGACCTGAATTGCCCGACGTTCGTCAGCGAACCGTGCATGCGCATCTCCCAGGGCCG TCATCCGGTGGTCGAGCAAGTGCTGACAACGCCGTTCGTGGCCAACGACCTGAGCCTGGACGACAACACCCGCATGCTGG TGATCACCGGTCCGAACATGGGCGGTAAATCCACCTATATGCGCCAGACTGCACTGATCGTGCTGCTGGCACACATCGGC AGCTTCGTGCCGGCAGCCAGTTGTGAACTGTCGCTGGTGGACCGGATCTTCACCCGGATCGGTTCCAGCGACGACCTCGC CGGCGGACGCTCGACCTTCATGGTGGAAATGAGCGAAACCGCGAACATCCTGCACAATGCCACCGAGCGCAGTCTGGTGC TGATGGACGAAGTCGGGCGCGGCACCAGCACCTTTGATGGTCTGTCCCTGGCGTGGGCGGCGGCGGAGCGTTTGGCGCAG CTGCGGGCCTATACTCTGTTTGCGACGCACTATTTCGAATTGACCGTGTTGCCGGAAGCCGAACCGCTGGTGGCCAACGT GCACCTCAACGCCACCGAGCACAATGAGCGCATCGTATTCCTGCACCATGTGTTGCCGGGGCCGGCAAGCCAGAGTTATG GCCTTGCGGTTGCGCAGCTGGCCGGTGTGCCAAGCGAAGTGATCGTGCGTGCTCGTGAACACTTGAGCCGCCTGGAAGAT ACCGCGCTGCCACATGAGGCGCCGAAGCCGGCCGCCAAGGGCAAACCGGCAGCGCCGCAACAGAGCGACATGTTTGCCAG CCTTCCGCATCCGGTGCTGGATGAGTTGGCCAAACTGGATCTGGATGACGTTACACCGCGTCGTGCGCTCGAAATGTTAT ATGCACTTAAGAACCGGATCTAA Protein sequence : MNKAVSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQAIPMCGIPYHAAEGY LAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFTVLE IKGWENLLAELERVNPVELLIPDDWPKDLPAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCETLTLAIGAAGC LLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLT VLLARQTSITCLLDRYRFENLQPQLKEIGDIERILARIGLRNARPRDLARLRDALGALPELQVAMTDLEAPHLQRLATTT STYPELAALLEKAIIDNPPAVIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYFIEL PSKQAESAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYEALLEDLISQLPPLQDTAGALAELDVLSN LAERALNLDLNCPTFVSEPCMRISQGRHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIG SFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLAQ LRAYTLFATHYFELTVLPEAEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVIVRAREHLSRLED TALPHEAPKPAAKGKPAAPQQSDMFASLPHPVLDELAKLDLDDVTPRRALEMLYALKNRI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pfl01_1134 | YP_346866.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 59 |
