Gene Information

Name : Noc_0625 (Noc_0625)
Accession : YP_342674.1
Strain : Nitrosococcus oceani ATCC 19707
Genome accession: NC_007484
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 672892 - 673407 bp
Length : 516 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTTCCAAATCTTCACCTACCCAGGTGATTCCTAAAAACCGTTTTGCACGTGTTCGCATGGCGTCGCTAAACGATCC
TGAAAAACAATCCCTGCTGGAGCTGGCGTTTGCGGTATTACACGATCTGCACCAGCCGGGCGTCGAGCTGCCGAGCCCCA
ACCATACCCGTGACTTTTTACGGATGTTGTTGGCGGAGCGCAAAGCGGAAGTCTTTGGTTGTTTGTATCTGGATAACCGA
CATCGAGTGATTGAAACGGTCGAGTTGTTTCAGGGAACCATTGATGGTGCTTCGGTGTATCCCCGTGTGGTGGTGCAACA
GGCACTTTCCGTTAACGCTGCAGCAGTGATGTTTTTTCATAATCACCCGAGTGGTGTTGCCGAGCCCAGTAACGCGGACG
AAGCGATTACGCGGCGGCTGAAAGAGGCGCTGGCACTCGTCGATATTCGTGTGCTGGACCATTTTGTGGTCACTGCTGGC
GAGTCAATTTCGTTTGCCGAACGCGGACTGCTCTAA

Protein sequence : 
MASKSSPTQVIPKNRFARVRMASLNDPEKQSLLELAFAVLHDLHQPGVELPSPNHTRDFLRMLLAERKAEVFGCLYLDNR
HRVIETVELFQGTIDGASVYPRVVVQQALSVNAAAVMFFHNHPSGVAEPSNADEAITRRLKEALALVDIRVLDHFVVTAG
ESISFAERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-29 56
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-29 56
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-29 56
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-27 54
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-23 50
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 3e-23 50
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-23 50
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-23 50
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 8e-23 49
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 5e-23 49
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 4e-23 49
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-21 49
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 4e-23 49
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-23 49
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-23 49
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 4e-23 49
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 4e-23 49
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-25 49
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-23 48
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-24 48
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-24 48
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-24 48
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-23 48
unnamed AAL08475.1 unknown Not tested SRL Protein 4e-23 48
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-29 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noc_0625 YP_342674.1 DNA repair protein RadC VFG1119 Protein 1e-29 56
Noc_0625 YP_342674.1 DNA repair protein RadC VFG0660 Protein 1e-23 50
Noc_0625 YP_342674.1 DNA repair protein RadC VFG1528 Protein 2e-23 49
Noc_0625 YP_342674.1 DNA repair protein RadC VFG1617 Protein 2e-23 49
Noc_0625 YP_342674.1 DNA repair protein RadC VFG1678 Protein 1e-23 48
Noc_0625 YP_342674.1 DNA repair protein RadC VFG1066 Protein 2e-23 48