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Name : Noc_2356 (Noc_2356) Accession : YP_344344.1 Strain : Nitrosococcus oceani ATCC 19707 Genome accession: NC_007484 Putative virulence/resistance : Virulence Product : flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN Function : - COG functional category : N : Cell motility COG ID : COG1157 EC number : 3.6.3.15 Position : 2700260 - 2701702 bp Length : 1443 bp Strand : - Note : - DNA sequence : GTGGTTGAAATCGTTTCCAAACCTCCTTTACTGGGAGGGCGCTGGCAGCACGCCCTGGCTGGGTGCAGGGAGCGCTTAGC CCGAGATACAGCACCTTTGGTCACGGTTGAGGGGCGGCTTACCCGAATGGTGGGGCTGACCTTGGAGGCAGTGGGATGTC AACTGCCAGTGGGAGGGCGTTGCCATATTCTGAGGCAGGAAAGGTTACCTGTGGAAGCCGAAGTGGTTGGGTTTGCCGGA GAAAGACTCTTTTTGATGCCTATCGGCGACCCGCGGGGGCTGGTGCCCAATGCCCCTGTTATTCCCCTTCGTCATGGCGG CAGGATGGCGGTTGGAGAGGCGTTGCTAGGCCGGGTTTTGGATGGCGGGGGACGTCCTTTGGATGATTTGGGTCCTCTTC GCGCTACCCATCGCGTTTCGTTGGAAGGGCAGCCCATCAATCCCTTGGCGCGGCAGCCTATTAGAGAGCCCATGGATGTA GGAGTAGCTGCTATCAATGCTTTGCTGACTATTGGCCGGGGTCAACGGATGGGACTATTTGCTGGTAGCGGAGTGGGTAA AAGCGTCTTACTGGGAATGATGACCCGCTATGCTAAGGCCGATGTTATCGTGGTGGGTTTGATTGGCGAGCGTGGCAGGG AAGTCCAGGAATTTATTGAAAATATTCTGGGCAAGGAGGGCCTAGCGCGCTCCGTGGTGGTAGCAACCCCGGCGGATCAT TCTCCCTTGATGCGTATTCACGGCGCAATGCTGGCGACTAGTATTGCTGAATATTTTCGAGATCAAGGCAAACAGGTGCT GCTATTGATGGATTCTCTGACTCGTTTTGGTCATGCCCAACGGGAGCTAGCTCTGGCTATTGGCGAGCCGCCAGCAACTC GCGGTTATCCTCCCTCTGTATTTGCCAAAATTCCCCAATTGCTGGAAAGGGCAGGCAATGGACGCTCGGGCAGCGGCAGT ATTACTGCTTTTTATACGGTTCTCACTGAAGGGGACGATCCTAATGATCCCGTGGCTGACTCGGCGCGGGCCATCCTGGA TGGTCATATTGTATTGTCCCGGCGCTTAGCGGAAGCGGGCCATTACCCGGCCATTGACATTGAAGCGTCGATTAGCCGGG TGATGAGTCAGATTACGGTACCAGAGCATCAGCAGGCCGCTCAGCAGTTTAAGCAAATTTATTCTCTATATAGCCAAAAC CAAGATCTTATCAGTGTGGGCGCCTATAGCCGCGGCAGTGATTCCCGACTTGATGAGGCAGTTGATAGGCAGCCTCAATT TCGTTCGTTTTTGCAGCAAGATATGTCCCAATCATTCTCTGTGAAAGAGAGCCTGGAAAGGCTTCAGCAGGCTTTAAAGG CAAAGCCAGCACCAAAAGTGGCGGCACCTGCCATCAATGTTGGGGGGGCTTCCAGGCAATTTAATAGTGGAGGCTATTCG TGA Protein sequence : MVEIVSKPPLLGGRWQHALAGCRERLARDTAPLVTVEGRLTRMVGLTLEAVGCQLPVGGRCHILRQERLPVEAEVVGFAG ERLFLMPIGDPRGLVPNAPVIPLRHGGRMAVGEALLGRVLDGGGRPLDDLGPLRATHRVSLEGQPINPLARQPIREPMDV GVAAINALLTIGRGQRMGLFAGSGVGKSVLLGMMTRYAKADVIVVGLIGERGREVQEFIENILGKEGLARSVVVATPADH SPLMRIHGAMLATSIAEYFRDQGKQVLLLMDSLTRFGHAQRELALAIGEPPATRGYPPSVFAKIPQLLERAGNGRSGSGS ITAFYTVLTEGDDPNDPVADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRVMSQITVPEHQQAAQQFKQIYSLYSQN QDLISVGAYSRGSDSRLDEAVDRQPQFRSFLQQDMSQSFSVKESLERLQQALKAKPAPKVAAPAINVGGASRQFNSGGYS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-84 | 51 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 6e-84 | 51 |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 8e-83 | 50 |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 6e-83 | 50 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 5e-84 | 50 |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 6e-84 | 50 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 5e-84 | 50 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-80 | 50 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-80 | 50 |
| YPO0267 | YP_002345348.1 | type III secretion system ATPase | Virulence | Not named | Protein | 8e-77 | 49 |
| lscN | AAO18044.1 | LscN | Virulence | TTSS locus | Protein | 1e-82 | 48 |
| ssaN | NP_460380.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 9e-73 | 48 |
| ssaN | CAA70537.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 7e-73 | 48 |
| ssaN | YP_216423.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 2e-72 | 48 |
| ssaN | NP_456113.1 | putative type III secretion ATP synthase | Virulence | SPI-2 | Protein | 1e-72 | 48 |
| ssaN | NP_805086.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 1e-72 | 48 |
| hrcN | ABQ88354.1 | HrcN | Virulence | Hrp PAI | Protein | 5e-63 | 45 |
| hrpJ4 | AAA81942.1 | HrpJ4 | Virulence | Hrp PAI | Protein | 5e-63 | 45 |
| hrcN | ABA47275.1 | HrcN | Virulence | S-PAI | Protein | 2e-72 | 44 |
| hrcN | AAT96299.1 | HrcN | Virulence | S-PAI | Protein | 1e-66 | 44 |
| hrcN | AAT96258.1 | HrcN | Virulence | S-PAI | Protein | 2e-66 | 44 |
| hrcN | AAT96339.1 | HrcN | Virulence | S-PAI | Protein | 2e-66 | 44 |
| hrcN | AAG33879.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-64 | 44 |
| hrcN | AAB06001.1 | HrcN | Virulence | Hrp PAI | Protein | 1e-64 | 44 |
| hrcN | AAR25633.1 | type III secretion cytoplasmic ATPase HrcN | Not tested | Not named | Protein | 2e-63 | 43 |
| hrcN | NP_791227.1 | type III secretion cytoplasmic ATPase HrcN | Virulence | Hrp PAI | Protein | 8e-66 | 43 |
| hrcN | AAT96141.1 | HrcN | Virulence | T-PAI | Protein | 1e-66 | 43 |
| hrcN | AAT96195.1 | HrcN | Virulence | T-PAI | Protein | 1e-66 | 43 |
| ysaN | AAS66842.1 | YsaN | Not tested | SSR-1 | Protein | 2e-66 | 43 |
| invC | AAS66861.1 | InvC | Not tested | SSR-2 | Protein | 1e-62 | 41 |
| ECs3730 | NP_311757.1 | ATP synthase SpaL | Not tested | LIM | Protein | 1e-62 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG2331 | Protein | 6e-107 | 65 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG1254 | Protein | 2e-122 | 64 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG2499 | Protein | 3e-113 | 62 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG0048 | Protein | 8e-78 | 50 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG0192 | Protein | 1e-81 | 49 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG0390 | Protein | 3e-81 | 48 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG0515 | Protein | 4e-73 | 48 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG2144 | Protein | 4e-80 | 46 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG2459 | Protein | 4e-68 | 42 |
| Noc_2356 | YP_344344.1 | flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN | VFG1008 | Protein | 5e-63 | 41 |
