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Name : Noc_1804 (Noc_1804) Accession : YP_343804.1 Strain : Nitrosococcus oceani ATCC 19707 Genome accession: NC_007484 Putative virulence/resistance : Unknown Product : type I topoisomerase Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 2039740 - 2042946 bp Length : 3207 bp Strand : - Note : - DNA sequence : ATGACCGAAGAGCAACTGGAACAACAATGCCTGGCCTGGTTTGCCGAGGGCGGTTGGGAACTGGCCCACGGCTCCGATCT GGCGCCTGGGCGTGCTGATTACCGCCAAGTATGGTTACTGGCCGATCTGGAAGCGGCCATTCGCCGCATCAACCCCCACT TGCCGGAAAGCTGTATCGAGCAGGTAGTGGCGGTGGTTGGTAAGCCCGAAAGCCTGGATACCGTGGTCAGCAATCGAGCC TTTCACCGGTTACTGCTGGAAGGGGTGCCGGTTGAATACAAGACCCTATCCTCCCTCTCCCCCTGGGAGAGGGCCGGGGT GAGGGAAAGGGAAGAGAAAATAGTCCACGACCGGGCGTTGCTGATCGATTTCGATGATCTGAACGCCAACCGCTTCCGGG CCATCAATCAGTTCACCCTCTTGGGGAGCAAGCAACTGCGCCGCCCGGATATTATTTGCTTTATCAATGGCCTGCCCTTG GCGGTGCTGGAGCTGAAAAGCCCCCATGCCGAGAATGTGGACATCTGGGATGCCTTCCATCAGCTTCAGACTTACAAGGA CGAAATCCCCGAGCTGTTCGTCTTTAACGAGGCGCTGGTAATCAGCGACGGCTACCATGCCCGGGTGGGTTCGCTTACGG CCAACCAGGAGCGCTTTATGCCCTGGCGCACTCTCAAGCACGAGGACGACAAGCCCCTGCTGGACTGGCAGTTGGAAACC CTGGTGCGGGGTTTCTTCGATCGGGAATTGTTCCTGGATTACCTTCGTTATTTCGTCATTTTCGAGACGGATTCCGGTCG CCTGAGCAAGAAGATTGCCGGTTATCACCAGTTCCACGCGGTGCGGGAAGCGGTGAAGGCCACCGTGATTGCCGCCCAGG AGCCCAGGCAGCGCTGGGCCGGTGAAAAGCGCGCCACCTACGCCGATGACCTGGTGCCGGGCAGCAAAAAGGCCGGCGTG GTCTGGCACACCCAGGGGTCCGGCAAGAGTCTTTCCATGTGCTGCTACGCGGGCAAGCTGCTGCAACAGCCCGAGATGAA CAACCCGACCCTGATGGTGGTCACCGACCGCAACGATCTGGACGGCCAACTCTTCGCCACCTTCAGCGCCGCCAAGGAAC TGCTGAAGCAGGAACCGGTGCAGGCGGAAGACCGGGATACCCTGCGCCGCTTGCTGGCCGAGCGGGCATCCGGTGGCATT ATCTTCACCACGGTGCAGAAATTCGCCCTGCTGGATGGGGAGAACGATCATCCCATTCTCAACGACCGCCATAATATCGT GGTGATTTCCGACGAGGCTCACCGCAGTCAGTACGGCCTTAAGGCCACCCTGAAGAAGGATGGCCGCTACACCTTCGGCT ACGCCAAGCACATGCGCGATGCCCTGCCCAATGCCTCCTTTATCGGTTTTACCGGTACCCCCATTGCCAATGAAGATAAG GATACCCGCGCCGTGTTCGGCGATTATGTGTCCATCTATGACATTCAGGATGCGGTGGACGATGGGGCTACCGTGCCCAT CTATTACGAATCCCGGCTGGCCAAATTGGATATCAACCGGGAGCTGATTGAGAAATTATCCGACCAAGTGGAAGCAGTGG TGGAGGATGAGGAAGACCTCGGCCAGCGGGAAAAAACCAAGGGCGAGTGGAGCCGCCTGGAAAAGCTGGTGGGGTCTGGG CCGCGGCTTAAGCAGGTGGCTGCCGATCTGGTGCGGCACTTTGAAATCCGCTCTCAGTCCATGGACGGTAAAGCCATGAT CGTGGCCATGAGCCGGGAGATTTGCGTGCATCTGTATAATGAGATTGTCGCCCTGCGCCCGGACTGGCACGACCCGGACC CGGAGAAAGGGGCCATCAAGATTGTGATGACTGGCTCCGCCTCTGACAGGCCCTTGTTGCAACCGCACCTTTACAACCAG CAGACCAAGAAACGACTGGAGAAGCGCTTCAAGGACATCTATGATCCCCTCAAGCTGGTGATTGTGCGGGATATGTGGCT CACCGGCTTTGACGCCCCTTGCTGCCATACCATGTATGTGGACAAGCCCATGAAAGGCCATAACCTGATGCAGGCCATTG CCCGCGTCAACCGGGTGTTCAAGAACAAGCCCGGCGGGCTGGTGGTGGACTATATCGGTATCGCCAATGCGCTCAAGCAA GCCCTGAAAACCTATACCGACGCCAAGGGCAAGGGCGAGCCGACCCACAGCGCGGAAGAAGCCTTTGCCGTGCTGCTGGA GAAGCTGGACATTATCCACGGGCTGTTTGCCAAGACACCCCAAAATGCTGGCTTTGATTACAGCAGCTTTGAGCATGAGG CGACCCGATTGCTGATTCCCACCGCCAACTATATATTGAGCCTTGAGGGCGGTAAGAAGCGTTTCCTCGATACGATTCTT GCTGTGAATATGGCCTACTCTTTGTGTGGCACCCTGGAGGAGGCCCGGGCCTATCATAAGGAGGTCGCTTTCCTATCGGC GGTGAAGGCTGCCCTTACCAAGCACACCCGCGTGGACAAGAAATTGACCCAGGAGGAAAAAAATTCCGCCCTCAAGCAGA TCCTGGACAATGCCCTGGTGGCGGAAGGCGTGACCGACGTGTTTGCGTTGTGCGGATTAGATAAACCTAACATCGGCCTG CTCTCGGAGGAATTCCTCGAAGACGTGCGGCGGATGCCTTACAAGAATTTCGCCGTGGAGCTACTGGAAAAGCTGCTGAA AGACAACATCAAGGCCAAAACCCGCAATAACGTGGTGCAGGAGAAGAAATACGCTGATCGGCTGCAAGAGACCCTGCGCC AATACAACAACCGGGGCATTGAAACCGCCCAGGTGATAGAAGAGCTGATCGCCATGGCCAAGCAATTCCAGGCGGAACTG GAGCGCGACGAAGCCCTGGGCCTGAACCCGGATGAAGTAGCCTTCTACGATGCCCTGGCCAACAATGAGAGTGCGGTGCG GGAGTTGGGTGATGAGACGCTGAAGAAAATCGCCGTGGAAATCACTGACAAGCTGCGCAGGTCCACTACCGTGGACTGGC AGGTGCGGGAAAGCATCAGGGCAAAATTGCGGATTCTGGTGCGCCGAACGTTGCAACGGTACAAATATCCGCCGGACAAG GCCCCGGAAGCGGTAGAGCTGATTTTGCAGCAAGCCGAGGTACTATCGGATGAAAAGCGCAACGCGCTAACAAGAAAAAA CGGGTAA Protein sequence : MTEEQLEQQCLAWFAEGGWELAHGSDLAPGRADYRQVWLLADLEAAIRRINPHLPESCIEQVVAVVGKPESLDTVVSNRA FHRLLLEGVPVEYKTLSSLSPWERAGVREREEKIVHDRALLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPL AVLELKSPHAENVDIWDAFHQLQTYKDEIPELFVFNEALVISDGYHARVGSLTANQERFMPWRTLKHEDDKPLLDWQLET LVRGFFDRELFLDYLRYFVIFETDSGRLSKKIAGYHQFHAVREAVKATVIAAQEPRQRWAGEKRATYADDLVPGSKKAGV VWHTQGSGKSLSMCCYAGKLLQQPEMNNPTLMVVTDRNDLDGQLFATFSAAKELLKQEPVQAEDRDTLRRLLAERASGGI IFTTVQKFALLDGENDHPILNDRHNIVVISDEAHRSQYGLKATLKKDGRYTFGYAKHMRDALPNASFIGFTGTPIANEDK DTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINRELIEKLSDQVEAVVEDEEDLGQREKTKGEWSRLEKLVGSG PRLKQVAADLVRHFEIRSQSMDGKAMIVAMSREICVHLYNEIVALRPDWHDPDPEKGAIKIVMTGSASDRPLLQPHLYNQ QTKKRLEKRFKDIYDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANALKQ ALKTYTDAKGKGEPTHSAEEAFAVLLEKLDIIHGLFAKTPQNAGFDYSSFEHEATRLLIPTANYILSLEGGKKRFLDTIL AVNMAYSLCGTLEEARAYHKEVAFLSAVKAALTKHTRVDKKLTQEEKNSALKQILDNALVAEGVTDVFALCGLDKPNIGL LSEEFLEDVRRMPYKNFAVELLEKLLKDNIKAKTRNNVVQEKKYADRLQETLRQYNNRGIETAQVIEELIAMAKQFQAEL ERDEALGLNPDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRRSTTVDWQVRESIRAKLRILVRRTLQRYKYPPDK APEAVELILQQAEVLSDEKRNALTRKNG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 70 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 44 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 44 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 43 |
