|
Name : Noc_1036 (Noc_1036) Accession : YP_343074.1 Strain : Nitrosococcus oceani ATCC 19707 Genome accession: NC_007484 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1145100 - 1146383 bp Length : 1284 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTTGATCCAAAATTACTTAGAAATGCCCTTGCCGATACCACTCGCCAATTGGCACGGCGGGGATTTGAATGGGATGC GGCTGCTTTTGCTACGCTGGAGGCGGAGCGCAAGGAGATGCAGGTCTGCACTCAAGAGCTCCAGGCTAAACGGAACGCCC GTTCCAAGATTATTGGTAAAGCCAAGGCGCAAGGAGAAGATATTGCCCCCTTGCTGGCGGAGATGACGGAACTGGGGGAT CACCTTAAAACCGTGGAAGCGCGGTTGGAAGTGGTTCAGGCCCAGATTGAGGAGATTCTGCTGGGAATCCCTAATCTACC CGACGCCAGTACGCCGCCAGGCAAGGATGAGCAAGACAATGTAGAGGTGCGACGTTGGGGTACGCCGCCTGCTTTAGAGT TCGTTCCTAAAGATCATGTGGATTTGGGGGCGTCTTTGGGGATGGATTTTGAAACTGCGGTAAAACTTAGCGGAACCCGT TTTGTTACCCTTATAGGGCCTTTAGCCCAATTACACCGGGCGCTTATCCAGTTTATGCTGGACGTACACACTCGCGAGCA TGGCTATACTGAGGTTTATGTCCCCTATTTGGCAAACCGGGAATCTTTAGTGGGAACCGGGCAGTTGCCTAAGTTTGAGG AAGGTTTGTTTGCTATCCGGGATACCGGCTATTATCTTATTCCAACCGCTGAAGTGCCGGTAACCAATCTTGTACGGGGG GAAATTCTGCTTGCTGAACGCCTGCCTCTCAAGTATGTAGCCCATACACCCTGCTTTCGGAGCGAAGCTGGTTCCTATGG CAAGGATACTCGGGGTATGATCCGCCAGCACCAGTTTGAGAAGGTAGAATTAGTACAGATTGTGCCGCCGGAAGTTTCCC AGCAGGCCCATGAAGACCTGACGGGTCACGCGGAGGCTATTTTGCAGCGGTTAGGGCTTCCTTATCGGGTGATGAATCTT TGTGCTGGCGATCTTGGTTTTGCCAGCAGTAAGACCTATGACCTGGAGGTATGGTTGCCAGGCCAGCAAACCTACCGGGA GATCTCCTCTTGTAGTAATTTCTTAGATTTTCAAGCGCGCCGGATTCAAGCTCGCTGGCGCGATCCAAAGACCCAGAAAC CAGCATGGGTCCATACTCTCAACGGTTCTGGACTAGCCGTGGGCCGGACTTTATTGGCCTTGATGGAAAATTATCAACAG GCTGATGGCAGTATCCGGATACCAGAAACCTTACAGCCCTATATGGGGGGTGTTTCAGTGCTTCAACCTTCCATAAGGGG GTAG Protein sequence : MLDPKLLRNALADTTRQLARRGFEWDAAAFATLEAERKEMQVCTQELQAKRNARSKIIGKAKAQGEDIAPLLAEMTELGD HLKTVEARLEVVQAQIEEILLGIPNLPDASTPPGKDEQDNVEVRRWGTPPALEFVPKDHVDLGASLGMDFETAVKLSGTR FVTLIGPLAQLHRALIQFMLDVHTREHGYTEVYVPYLANRESLVGTGQLPKFEEGLFAIRDTGYYLIPTAEVPVTNLVRG EILLAERLPLKYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVELVQIVPPEVSQQAHEDLTGHAEAILQRLGLPYRVMNL CAGDLGFASSKTYDLEVWLPGQQTYREISSCSNFLDFQARRIQARWRDPKTQKPAWVHTLNGSGLAVGRTLLALMENYQQ ADGSIRIPETLQPYMGGVSVLQPSIRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-97 | 52 |
