Gene Information

Name : Noc_A0001 (Noc_A0001)
Accession : YP_342044.1
Strain :
Genome accession: NC_007483
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 280 - 1080 bp
Length : 801 bp
Strand : -
Note : -

DNA sequence :
ATGCGTACTATGACACAGCCCTTGAGTGAAAATCAGCTTAGGGAAAGAGCCTCTTCAGTATTCGCTACGACAGCGCACGG
CCGAGTCTCTGGCCGGTATCAGTTTATCTCTACCCTGGCCATGATCGAGGCCCTTGAAAGGGAAGGATGGAGCCCGGTGC
ATGCCGAGGAGAGCCGAGTTCGGATTCCCGACCGAAAGGGATTTAGCAAGCATTTACTACGCTTCCGGCGCTTTGATAAT
GAACTTCCCATGGTGGGCGATAGTTTCCCGGAAATTGTGCTTGTGAACTCCCATGATGGGTCATGCGCCTACCAACTCCA
TGCCGGTTTATTCCGCTTAGTTTGCTCCAACGGAATGATTGTGGCGGATTCGAATATGGGACAGGTTAAGCGGCGGCATA
CCGGCGATGTGGTTAGGGAGGTGATTGAGGGCACGTATGAAATTGTGGAGGAACTGCCAAGGATTGCCGCAAGGGTAGAG
GACTTCAAAACCCTTGAGCTTTCCCTGCAGGAGCAGGAAATCTTTGCCGAATCCGCTTTGCGGGTCCGGTGGCGGGAAGG
CGAAGCACCTTGTATGCCCCAAGCGTTGCTTAGGCCCCGGCGGCATGAAGACCAGGGTAACGATTTATGGGCCACTTACC
AGCGGGTACAGGAAAACATGCTGAAAGGGGGAATCCGCGGCAGGTCGGCTGTTGGGCGCCAGATCACCACCCGAGCAGTC
AAGTCGGTAGACGGTAACGTCAAACTCAATAAGGCGCTTTGGTTCCTCACCGAACAAATGGCTGAACTTAAAAAGGCATA
A

Protein sequence :
MRTMTQPLSENQLRERASSVFATTAHGRVSGRYQFISTLAMIEALEREGWSPVHAEESRVRIPDRKGFSKHLLRFRRFDN
ELPMVGDSFPEIVLVNSHDGSCAYQLHAGLFRLVCSNGMIVADSNMGQVKRRHTGDVVREVIEGTYEIVEELPRIAARVE
DFKTLELSLQEQEIFAESALRVRWREGEAPCMPQALLRPRRHEDQGNDLWATYQRVQENMLKGGIRGRSAVGRQITTRAV
KSVDGNVKLNKALWFLTEQMAELKKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-49 45
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-49 45
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 4e-49 45
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 2e-50 44
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 5e-50 43
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 3e-50 43
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 3e-50 43
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 3e-50 43
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 6e-51 43
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 6e-51 43
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 1e-48 43
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 6e-53 43
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 1e-48 43
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 9e-51 42
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 6e-51 42
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 2e-49 42
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 2e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Noc_A0001 YP_342044.1 hypothetical protein VFG1676 Protein 8e-49 43
Noc_A0001 YP_342044.1 hypothetical protein VFG1526 Protein 3e-50 43
Noc_A0001 YP_342044.1 hypothetical protein VFG1615 Protein 6e-49 43
Noc_A0001 YP_342044.1 hypothetical protein VFG0658 Protein 3e-51 43