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Name : pilB (PSHAa0378) Accession : YP_338919.1 Strain : Genome accession: NC_007481 Putative virulence/resistance : Virulence Product : type IV pilus biogenesis protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 393375 - 395048 bp Length : 1674 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1971619 DNA sequence : ATGAATATTAACTCACCGTTATTAAGAAAATTTATTACCCTTGGCCGTGTTGATGCCGATATAGTAAAAACTAAACAGCA AGAGTTTGCCTCTACTGCTGAGCTTATTGCTAAATGCGGAAAAATTGACAGTAAAGATTTAGCGGCGCAATGCATTGATT TATTTAGGGTGCCTTTTTTTGATTTAAAAGACTTTAATACTGCACTTATTTCTCCTGAGTTAATAAAAGAAAAACTGATC CGTAAGCATCATATTTTGCCTTTAGTACAAAAAGGCAGAAAAGTGTATATTGCCGCCTCTGATCCTACCGATTACGGCGC ATTTGAAAACTTTGAATTTAGTACTGGTTTGTCTTGCGAAGTGGTAGTGGTTGACTACATTCAACTCGATAAAAAAATAG AACAATTGCTTGATGCCACTGGCAGCTTAAATTTAAGTGATGACGAGTTTAAAGAGTTTGCCGAACTAGACGCCGATATA CAAAAAGACACCACTAAAGACGATGACAAAGACGATGCGCCAATCATTGTTTACATCAATAAAATATTAATGGATGCGAT TAAAAAAGGTGCGTCTGATTTACACTTTGAACCCTACGAGCACAAGTACCGAATTCGTTTTAGAATTGACGGTATTTTGC ACGAAGTAGCCAGCCCACCAAACAGTTTAGCTACTAAGCTTTCGGCGCGTATTAAAGTAATGTCGCGCCTTGATATTGCC GAAAAACGTAAACCACAAGATGGCCGCATAAAGCTAAAAATAACCGAGCGTAAAAGTGTCGATTTTCGGGTAAGCACCAT GCCCACTTTATGGGGCGAAAAGATTGTAATGCGTATTCTTGATTCATCTAGCGCCATGCTTGGCATTGATGTATTAGGTT ACGAACCCGAGCAAAAAAAGCTGTATATGGATGCGCTTGAGCAACCACAAGGGATGATATTAGTAACTGGGCCTACTGGC TCGGGTAAAACGGTATCGCTTTACACCGGCTTAAATATATTAAACCAGCCTGAGCGTAATATTAGTACCGCCGAAGATCC GGTAGAAATTAACCTCGAAGGGGTTAACCAAGTACAAATTAATATTAAAGCCGATATGACCTTTGCCAACGCATTGCGCG CATTTTTACGCCAAGATCCCGATGTAGTAATGGTAGGTGAAATACGTGACCTAGAAACCGCCGAAATATCAATTAAAGCG GCGCAAACAGGTCACTTAGTGCTTTCGACCTTGCATACTAACTCGGCGCCCGAAACCATTACCCGTTTATTAAACATGGG CGTACCGGCATATAACGTAGCAAGTTCAATTAGTTTAATTATAGCTCAGCGCCTAGCGCGCCGCTTATGCCCTAAATGTA AAACACCTGAAAATTTACCTAGCGAAGAACTGCTACGCCAAGGCTTTAGCCAGCAACAAATTAGTGAAATGACCCTGTAT GCACCTAAAGGTTGCGAAAACTGTACCGATGGCTATAAAGGTCGTGTAGGTATTTACGAAGTAATGAAAATTACCCCAGA AATAGCACAAATTATAATGCGCGGTGGTAACTCACTAGAAATAGCTGAAGTGTCGCTTAAAGCCGGATTTAATAACCTGC GTTTATCGGGTATTCGTAAAGCCGCCGACGGCATGACCTCGCTAGCCGAGATTAATCGGGTAACGAGTTTTTAA Protein sequence : MNINSPLLRKFITLGRVDADIVKTKQQEFASTAELIAKCGKIDSKDLAAQCIDLFRVPFFDLKDFNTALISPELIKEKLI RKHHILPLVQKGRKVYIAASDPTDYGAFENFEFSTGLSCEVVVVDYIQLDKKIEQLLDATGSLNLSDDEFKEFAELDADI QKDTTKDDDKDDAPIIVYINKILMDAIKKGASDLHFEPYEHKYRIRFRIDGILHEVASPPNSLATKLSARIKVMSRLDIA EKRKPQDGRIKLKITERKSVDFRVSTMPTLWGEKIVMRILDSSSAMLGIDVLGYEPEQKKLYMDALEQPQGMILVTGPTG SGKTVSLYTGLNILNQPERNISTAEDPVEINLEGVNQVQINIKADMTFANALRAFLRQDPDVVMVGEIRDLETAEISIKA AQTGHLVLSTLHTNSAPETITRLLNMGVPAYNVASSISLIIAQRLARRLCPKCKTPENLPSEELLRQGFSQQQISEMTLY APKGCENCTDGYKGRVGIYEVMKITPEIAQIIMRGGNSLEIAEVSLKAGFNNLRLSGIRKAADGMTSLAEINRVTSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-86 | 49 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-87 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG0112 | Protein | 8e-156 | 60 |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG1880 | Protein | 1e-139 | 54 |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG0233 | Protein | 2e-115 | 50 |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG2048 | Protein | 3e-87 | 49 |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG1876 | Protein | 1e-84 | 48 |
| pilB | YP_338919.1 | type IV pilus biogenesis protein | VFG0182 | Protein | 6e-86 | 47 |
