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Name : exeD (PSHAa0232) Accession : YP_338778.1 Strain : Genome accession: NC_007481 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 245801 - 247867 bp Length : 2067 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7789814; Product type t : transporter DNA sequence : ATGGTTCAGGCGCTACACCTCACAAAAATTAAAAAAGGGTTAGCTAAGTACGCAGCACTTTTTCTAGCAGCAAGCATTTC GTTTTCTGTTGCTGCAGTTGAATACGCTGCTAACTTTAAAGGCACTGATATTAATGAGTTTATTAATATTGTTGGTAAAA ATCTTAATAAAACAATAATTATTGACCCTAACGTACGTGGCAAAGTAAATGTGCGTAGTTATGAGTTAATGGGCGAAGCG CTTTATTATCAATTCTTTTTAAATGTATTAGAAGTTTATGGCTATTCAGCCATTGAAATGGACAATAATATAATAAAAAT TGAAAAAAGCTCGGATGCTAAAAAATCAAACGTACCGCTAATTACAGATGGCAGTGAAGCCAGCGGCGATATGATGATTA CCCGAGTTGTACGGGTTAAAAATGTAAGCGTGCAAGAGCTAGGTCCTTTGGTTCGTCAATTTAGCGACCAAAAAGATGGC GGCCATGTTGCTAACTTTAATGCCGCAAACGTAATGATGCTTACCGGGCATGCTGCATCGGTAAACCGCTTAGTTGAAAT AATACGCTCGGTTGATCAAGCGGGCGATAAGCGTGTTGATATTGTAAAGCTTAAATTTGCTACCGCAGATGATGTGGTAT CTGTAGTTGATAATATTTATAAAGACAGCGGAAAAGGCAGTATTCCAGAGTTTTTAATACCTAAAGTGGTTGCCGATGGC CGTACTAACAGCGTTATTGTTAGTGGCGAAGGCCAAGCACGCACCCGTGCTATTGAGCTTATTAAGCGCTTAGACGGTGA GCTTGAAAGCCAAGGGAACACTAAAGTATTTTATCTAAATTACGCAAAAGCAGAAGATTTAGTTAAAGTATTGCAAGGTG TTAGTAAGTCGCTAACAGATGACACTCAAGGCGGCAGCGCAACCAAAACACGTACTCGCAGTAACAACGAAACCAGCATA GAAGCCCACCCCGATTCAAACTCATTAATTATTACAGCACAACCCGATACCATGCGCTCGCTTGAGTCAGTTATTGAGCG TTTAGATATTCGCCGTGCGCAAGTATTGGTTGAAGCAATTATAATTGAGGTAATGGAAGGCGACGGTATTAACTTTGGTT TGCAGTGGATTTCTGAGCAAGGCGGTATGCTGCAGTTTAATAATGGCACAACTGTACCGGTTGGTGCGTTAGCTGTAGCG GCTGAGCAAGCACGTGATACTACCGTATCTAAAAATATAATTGGTACCGAAAGCGGCACAATTACTCAGGTTGATGAAAC TACTAAGGGTGATTACGGCCCATTAGCATCATTACTCGGTGGGATTAACGGCTTAGCCATGGGGGTGATAAAAAATGACT GGGGCGCAATTGTTCAAGCCGTTTCGACCGATAGTAACTCAAACATTTTGGCGACCCCCTCTATTACTACTATGGATAAT GAAGAAGCGTCTATTTTAGTGGGTCAAGAAGTGCCTATAATTACTGGCTCGCAAACCGGGAGTAATAACACCAACCCATT TCAAACAGTTGAACGCCAAGAAGTGGGTATAAAGCTTAAAGTAACCCCGCAAATTAACGATGGCTCTGCTGTGCAGTTAA CTATTGAGCAAGAAGTGTCGAGTGTAAGTGGTGCTACTGCTGTTGATATTTCAGTTAATAAGCGTTCAATTAAAACCACA GTAATGGCCGATGATGGCGGTATGGTGGTACTTGGCGGATTAATAGATGAAGACGTACAAGAGAGTGTATCTAAGGTGCC ACTACTAGGCGACATTCCTATTTTAGGTCACTTATTTAAATCAACTAATACCACACGACGTAAGCGTAACCTGATTGTAT TTATTCGCCCAACTATTATTCGCGACGGAATTAGCATGAATAAGTTGAGCTTTAATAAATATAACTTTATTCGTGGCGAG CAATTTAAGCAGCGCGAAGATGGTATAGAGTTAATGCCAAGAACCGACACCCCTATTTTACCCGAGTGGAATGATGAGCT AATACTGCCACCTACGTATGAAGAGCATTTACGTAAACAAAATGCACAAGAGCGTAAAGATGACTAA Protein sequence : MVQALHLTKIKKGLAKYAALFLAASISFSVAAVEYAANFKGTDINEFINIVGKNLNKTIIIDPNVRGKVNVRSYELMGEA LYYQFFLNVLEVYGYSAIEMDNNIIKIEKSSDAKKSNVPLITDGSEASGDMMITRVVRVKNVSVQELGPLVRQFSDQKDG GHVANFNAANVMMLTGHAASVNRLVEIIRSVDQAGDKRVDIVKLKFATADDVVSVVDNIYKDSGKGSIPEFLIPKVVADG RTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKAEDLVKVLQGVSKSLTDDTQGGSATKTRTRSNNETSI EAHPDSNSLIITAQPDTMRSLESVIERLDIRRAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALAVA AEQARDTTVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIVQAVSTDSNSNILATPSITTMDN EEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIKLKVTPQINDGSAVQLTIEQEVSSVSGATAVDISVNKRSIKTT VMADDGGMVVLGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIRDGISMNKLSFNKYNFIRGE QFKQREDGIELMPRTDTPILPEWNDELILPPTYEEHLRKQNAQERKDD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-162 | 53 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-155 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| exeD | YP_338778.1 | general secretion pathway protein D | VFG2047 | Protein | 8e-152 | 51 |
