|
Name : sctU (BURPS1710b_A0680) Accession : YP_335839.1 Strain : Genome accession: NC_007435 Putative virulence/resistance : Virulence Product : type III secretion system protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 877760 - 878959 bp Length : 1200 bp Strand : - Note : identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 DNA sequence : ATGCGAAGCACGGCGCGCGCTTCGCATCCGGCGGCGCGGCTTCGGCTCGGCGCGCGCGCGGCGCGCGGCGCGCCGCTAAC GTACGCGGCATCTCCGACTCCCGAAGGAAACGCGGCGATGGCCGAAGAGAAAACCGAAGAGCCCACCGAGAAGAAGCTGA AGAAGGTGCGCGAGAAGGGCCAGGTCGCCAAGAGCAAGGACATCGCCGACGCGATGACGCTCGCGGCCGCGATCGGCGTG CTCACGGCGTGCGAATCGATGCTCACGGGCGGCCTCTCGCGCGCGGTTCGCACCGCGCTCGACTTCGTGCGCGGCGAGCG CACCCCGCAGGCGACGCTCGCCGCGCTGCACGATCTCGCCGCGAGCGCCGTGCTGACGATGCTGCCGTTCGTCGCCGCCG CGATCGTCGCGGGCATCGTGTCGCAGGCGCCGCAGGCGGGCTTCCTGATCACGCTCGAGCCCGTGATGCCGAAGTTCGAC GCGATCAATCCGATGGCGGGCATCAAGCGGATCTTCTCGCTGAAGTCGCTGCTCGAGCTCGTGAAGATGATCGTCAAGGC GCTCGTGCTCGCGTGCGTGGCATGGAAGATGATGACCTCGCTGTTTCCGCTCGTCGTCGCGAGCGTGTACGAAGCGACGC CGCAGCTCGCGCGCGTGCTGTGGACGGTGCTGATGAAGCTGCTCGGCACCGTGTCGGTCGTCGTCGCGGTGCTCGCGGCG GCCGATTACAAGATCGCACGCGTGATGTTCGTTCGCGAGAACCGGATGACGAAGGAGGAAGTCAAGCGCGAGCACAAGGA GAGCGACGGCGATCCGCACACGAAGGGCGAGCGCCGCCGGCTCGCGCGCGAGATTGCGACGAGCGCGCCGCCGCGGCAGC GGGTCGGCCAGGCGAACGTGCTCGTCGTCAACCCGACGCACTACGCGGTCGCGATCCGCTATGCGCCCGACGAGCATCCG CTGCCGCGGGTCATCGAGAAGGCCGTCGACGACGGCGCGCTCGCGCTGCGCCGCCACGCGCACGCGCTCGGCGTGCCGAT CGTCGGCAATCCGAGCGTCGCGCGCGCGCTGTACCGCGTCGAGCGCGACGCGTCGATTCCCGAAGAGCTGTTCGAGACGG TGGCCGCGATCCTGCGCTGGGTCGAGTCCCTCTCGGGCGCGCGCGCGGTCGCCGCCGTTTCCTCCGCGAGGTCGTCATGA Protein sequence : MRSTARASHPAARLRLGARAARGAPLTYAASPTPEGNAAMAEEKTEEPTEKKLKKVREKGQVAKSKDIADAMTLAAAIGV LTACESMLTGGLSRAVRTALDFVRGERTPQATLAALHDLAASAVLTMLPFVAAAIVAGIVSQAPQAGFLITLEPVMPKFD AINPMAGIKRIFSLKSLLELVKMIVKALVLACVAWKMMTSLFPLVVASVYEATPQLARVLWTVLMKLLGTVSVVVAVLAA ADYKIARVMFVRENRMTKEEVKREHKESDGDPHTKGERRRLAREIATSAPPRQRVGQANVLVVNPTHYAVAIRYAPDEHP LPRVIEKAVDDGALALRRHAHALGVPIVGNPSVARALYRVERDASIPEELFETVAAILRWVESLSGARAVAAVSSARSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | YP_362157.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 3e-62 | 44 |
| hrcU | BAB07858.1 | HrcU | Virulence | Hrp PAI | Protein | 4e-65 | 44 |
| hrcU | YP_198724.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 8e-65 | 44 |
| hrcU | AAP34345.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-58 | 43 |
| XC_3012 | YP_244080.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-57 | 43 |
| hrcU | NP_636604.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-57 | 43 |
| hrcU | NP_640761.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 3e-61 | 42 |
