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Name : sctS (BURPS1710b_A0431) Accession : YP_335590.1 Strain : Genome accession: NC_007435 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein SctS Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 599693 - 599956 bp Length : 264 bp Strand : + Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 DNA sequence : ATGGAAATCGACTCGCTGATCCGTTTCTGCACGCAGGCCATGCTGCTCTGCCTGAGCGTCTCGCTGCCGCCCGTGATCGT GGCGGCTCTGGTCGGGCTTGGCGTATCGTTCGTGCAGGCGATCACGTCGCTGCAGGATCAGACCTTGCCGCAAGTGCTCA AGCTGATCGCGGTCACGATCACGATCATGGTTGCCGCGCCGACCGGCTGTGCGGCGATCCTGCATTTCGCGAATCAGATG ATGCAGCTTGCCGTCCCGCAATGA Protein sequence : MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAPTGCAAILHFANQM MQLAVPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcS | YP_362152.1 | HrcS protein | Virulence | Hrp PAI | Protein | 3e-14 | 53 |
| hrcS | BAB07863.1 | HrcS | Virulence | Hrp PAI | Protein | 2e-14 | 53 |
| hrcS | AAD21322.1 | HrcS | Virulence | Hrp PAI | Protein | 2e-14 | 53 |
| hrcS | YP_198719.1 | hypothetical protein | Virulence | Hrp PAI | Protein | 3e-14 | 53 |
| hrcS | AAP34350.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-14 | 52 |
| hrcS | NP_640756.1 | HrcS protein | Virulence | Hrp PAI | Protein | 4e-14 | 52 |
| XC_3017 | YP_244085.1 | HrcS protein | Virulence | Hrp PAI | Protein | 1e-11 | 50 |
| hrcS | NP_636599.1 | HrcS protein | Virulence | Hrp PAI | Protein | 1e-11 | 50 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 6e-08 | 46 |
| ssaS | NP_456108.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 8e-07 | 44 |
| ssaS | NP_805091.1 | type III secretion protein | Virulence | SPI-2 | Protein | 8e-07 | 44 |
| ssaS | CAA68200.1 | secretion system apparatus, SsaS | Virulence | SPI-2 | Protein | 5e-07 | 44 |
| ssaS | YP_216428.1 | secretion system apparatus protein SsaS | Virulence | SPI-2 | Protein | 7e-07 | 44 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | Virulence | SPI-2 | Protein | 7e-07 | 44 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-06 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctS | YP_335590.1 | type III secretion inner membrane protein SctS | VFG0043 | Protein | 2e-09 | 47 |
| sctS | YP_335590.1 | type III secretion inner membrane protein SctS | VFG0395 | Protein | 4e-09 | 46 |
| sctS | YP_335590.1 | type III secretion inner membrane protein SctS | VFG0520 | Protein | 2e-07 | 44 |
