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Name : sctV (BURPS1710b_A0428) Accession : YP_335587.1 Strain : Genome accession: NC_007435 Putative virulence/resistance : Virulence Product : SctV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 594935 - 597052 bp Length : 2118 bp Strand : + Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : ATGTTCAAATCGCTGAAACTGCCCGCGGGCGGTGAAATCGGAATCGTCGCCCTGGTCATCGCGATCATCTCGCTGATGAT ACTGCCGCTGCCGCCAGTCGCGATCGACCTGCTGCTCGGCATCAACATCACCATCAGCGTGACGCTGCTGATGGTGACGA TGTACGTTCCGGATATCGCCGCGCTGTCCGCGTTTCCGTCGCTCCTGCTGTTCACGACGCTGTTCCGGCTGTCGCTCAAC ATCGCGTCCACCAAGTCGATCCTGCTGCATGCGGAAGCGGGCAACATTATCGAGAGCTTTGGCCAGCTGGTGGTGGGCGG CAACCTCGTCGTGGGCCTGGTCGTATTCGCCATCATCACGACCGTGCAATTCATCGTGATCGCGAAAGGCTCCGAGCGTG TTGCGGAAGTCGGCGCCCGCTTCACGCTGGATGCGCTTCCGGGCAAGCAGATGAGCATCGACGCCGATTTGCGCTCCGGC CTGCTGAGCACCGAGGAGGCACGGAAGAAGCGCGCGACGCTGGCGGTCGAAAGCCAATTGCACGGCGGGATGGATGGCGC GATGAAATTCGTCAAGGGCGACGCGATCGCCGGTCTCATCATCACGATGATCAACATCGTCGCGGGCATTGCGGTCGGCG TTGCATATCACGGAATGTCGGCGGGCGACGCGGCAAACCGCTTCTCCGTATTGTCCGTCGGCGACGCGATGGTGTCGCAG ATTCCGTCCCTGTTGCTCTCCGTCGCGGCAGGCGTGATGATCACGCGCGTCACCGACGAGCGCGCGCCGAAGCGGCGCTC GCTCGGCGATGAAATCAGCCACCAGCTCGGCTCGAGCGCGCGTGCATTGTATTTCGCAGCGTTTCTCCTGCTCGGCTTCG CCGCCGTGCCGGGCTTCCCCGCGGCGCTGTTCGTGCTGCTTGCCGCCGCGCTCGCGTTCGCCGGCTATCGACTGTCACGA AAGGGTTCGCCATCGTCCGGCGCCGCTCGCGGACAAGAGCAGGAGGCGCTGCGTGCGATGCAGCGTTCGGGCGCCAAGGC GGACGTCCCTCCGATCCTGCCGCGCGCGCCTCAGTTCGCTTGCGCCGTCGGCGTTCGGATCGCGCCGGATCTCGCGTCCG GTCTTGCGTTGCCGAGGCTCGACGAAGCGCTCGACCTCGAGCGTGCACGCCTGCAGGACGAACTCGGGCTTCCTTTTCCC GGCGTGACGATGTGGATTCATCCGACGCTCTCGGCAGCAACCTTCGAAGTGCTGATCCACGACGTGCCGCATCTTTCCGT CACGCTTCCGGCTCGCAAGGCGATGCTGCCGCAGCAAAGGCATCTGTCGCCCGCTCACGCCGCGCTGACGGACGAGCAAA AGGCGCGGCACCGGGATTTGATCGAACGGAGCGAAGCCGGCCCGCCGATCGACGCAAGCGGCCAAGCGACCCACTGGATC GACGAGCCGGCGGTCACCGCGAAGGACAGCGTATGGCGCGCAGAACAGATCATCGCGTACGCATCCGTGGCGGCGATCCG CACTCACGCACCGCTTTTTGTCGGCATCCAGGAAGTGCAGTGGATACTCGATCAGTTGGGCGCCGACTCGCCGGGCCTCG TCGCCGAAGTGCTGAAGATCTTGCCGTCGACGCGCATTGCCGATGTGCTACGCCGCCTGCTTGAAGAGCAGATATCGATC CGCAACGTGCGAACGATCATGGAAAGTCTGGTCGCATGGGGCGCGAAGGAGAAAGACATGCTGATGTTGACCGAATACGT GCGCGGCGACCTGTCGCGCTTTCTCGCCCATCGAGCCGCGCAAGGCGAACGCGTGTTGTCCGCGGTCCTGTTCGACCTGC AGGCGGAACAGCACATCCGCCAGGCGATCAAGCAAACGCCGACAGGCAATTTCCTCGCACTGCCCCCGGACGACGCATCG CGGCTTGTCGATCGCATTCAGTCGCTCGTCGGCGCGAACGCCCGCACGGACATCGCGCTCGTCACCTCGATGGACATTCG CCGCTATGTACGACGAATGATCGAGCGACGCATCGACTGGCTAGCCGTGTATTCGTATCAAGAGCTCGGCGAACACGTCG AGCTGCGTCCGGTCGGCCGCGTGTCGCTCCAGGGTTGA Protein sequence : MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSG LLSTEEARKKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALAFAGYRLSR KGSPSSGAARGQEQEALRAMQRSGAKADVPPILPRAPQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFP GVTMWIHPTLSAATFEVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQATHWI DEPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVLKILPSTRIADVLRRLLEEQISI RNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDAS RLVDRIQSLVGANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 7e-134 | 57 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 7e-134 | 57 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-135 | 57 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-135 | 57 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-135 | 57 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-131 | 57 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-131 | 57 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-106 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | YP_335587.1 | SctV | VFG0064 | Protein | 2e-104 | 42 |
