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Name : sctU (BURPS1710b_A0427) Accession : YP_335586.1 Strain : Genome accession: NC_007435 Putative virulence/resistance : Virulence Product : type III secretion system protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 593861 - 594919 bp Length : 1059 bp Strand : + Note : identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 DNA sequence : ATGAGCGACGAAAAGACCGAGGAACCCACCGACAAGAAGCTGCGTGACGCGCGTCGAGACGGTGAGGTATCCCGTAGCAC GGATCTCTCCGACGCCGTATCCATGTCCGCTGCGATTCTGTTGCTGGTTGCGGCCGCCGATCATTTCGGCGATGCAATGC GAGCGTTGGTCAACGGCGCGCTAGCGTTCGTCTCCGCCGATCATTCGCTCGTCGAGATGACCGCGCGGCTGTACCAGTTC GGCGGCATCGCGCTATCGGCGGTCATGCCGCTGCTGTTCGTCGCGGCGCTCGCGGGTATCGGCGGCTCGGTCCTCCAGGT CGGGCTGCAGATATCGCTGAAACCGGTCATGCCGAATCTCGGCGCACTCAATCCGGCTGAAGGTCTGAAGAAGCTTTTTT CGCCGCGTAGCGCGATCGAGTCCATCAAGATGATCGTCAAGGCCGTCATCGTGTTCTGCGTGGCGTGGAAAACGATCGTA TGGCTGTTCCCGCTCATCGCCGGCGCGCTGTATCAATCGCCGCCCGAACTGTCACGCATATTCCGGGAGATTCTGGCGAA GTGGCTGATGGTGGTGGCCGGTCTATGCCTTCTGATGGGGGCGGCCGACGTGAAGCTCCAGCGCTTCATGTTCATGCAAA AGATGAAGATGACGAAGGACGAGGTGAAGCGCGAATCCAAAAACGACGAAGGCGATCCGCTGCTCAAGGGCGAGCGCAAG CGGCTTGCGCGCGAACTGGCGGCCGCACCGCCGCAGCATCAGGTCGCGCACGCGAATTTCGTCGTCGTCAACCCCACCCA CTACGCGGTCGCGGTTCGTTACGCGCCCGACGAGCATCCGCTCCCCCGCGTGATCGCGAAGGGCCTCGACGAAGCGGCCA TCGCACTGCGGCGAGCCGCGCAAGACGCGAACATCCCGATCATCGGCAATCCCCCTGTCGCGCGCGCGTTGTTCCGAATC GGCGTCGAGGAGCCGGTGCCCGAAGAACTGTTCGAGATCGTTGCAGCGATCCTGCGCTGGATCGACGCGATCGGCCCGCG CCGAAACGAACGGGCCTGA Protein sequence : MSDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQF GGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK RLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNPPVARALFRI GVEEPVPEELFEIVAAILRWIDAIGPRRNERA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | AAP34345.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-57 | 46 |
| XC_3012 | YP_244080.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 8e-49 | 45 |
| hrcU | NP_636604.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 8e-49 | 45 |
| hrcU | YP_362157.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-57 | 45 |
| hrcU | NP_640761.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-60 | 45 |
| hrcU | BAB07858.1 | HrcU | Virulence | Hrp PAI | Protein | 5e-58 | 45 |
| hrcU | YP_198724.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 9e-58 | 45 |
