Gene Information

Name : staB (BURPS1710b_A1599)
Accession : YP_336756.1
Strain :
Genome accession: NC_007435
Putative virulence/resistance : Virulence
Product : chaperone protein EcpD
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1949261 - 1949983 bp
Length : 723 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGTGCGTCGCCGTGGCGGCGGCGTGTTGTCTGGCTTCGACCTTGTCCCAGGCGGCGATCGTCATCACCGGAACCCGCGT
CGTCTATCCGGAAAGCAGTCGCGAGGTCAACGTTCGGCTCAACAACGTCGAGCAGTCGCCGGTATTGGTGCAGGCGTGGA
TCGATGACGGAAATGCGGGCGCGAGCCCGGACGAGATCAAGGTGCCGTTCGTTCTCATGCCGCCCGTGTTTCGCGTCGAA
CCGAAGAAGGGGCAAACGCTGCGCGTCATGTACACGGGCGACGATCTGCCGAAGGACCGCGAATCCGTGTACTGGCTGAA
CGTCCTGGAAATTCCTCCAAAGCCGACCGTCGAAGCCGAGCAGAACCTCTTGCAGCTCGCGTTCCGCACGCGCATCAAAC
TGTTTTTCCGCCCGTCTGCGTTGGAGGACGGAAACGCGGCGCAGGCGCGCGATCAGCTCAAATGGAAGATCGTGCGCAAC
GAAAAGGGCGTGAGCGTGCTGCGTGCGGAGAATCGTTCTCCTTATTACATCTCGATAAGCCAGGCGACCGCGAAAAGCGG
CGACAAGAGCGTGCAGTTCGATCCGGGCATGGTCCCTCCGTTCGGCAGCAAGGAATTCGTGAGCAAGCATGACATCTCGA
CGCTGTCCACGCATGCCGAGATTGCCTACAAGCTGCTCAATGACTATGGGGCGGAAGTGGCGGGCTCGGCAACCGCGGAA
TAA

Protein sequence : 
MCVAVAAACCLASTLSQAAIVITGTRVVYPESSREVNVRLNNVEQSPVLVQAWIDDGNAGASPDEIKVPFVLMPPVFRVE
PKKGQTLRVMYTGDDLPKDRESVYWLNVLEIPPKPTVEAEQNLLQLAFRTRIKLFFRPSALEDGNAAQARDQLKWKIVRN
EKGVSVLRAENRSPYYISISQATAKSGDKSVQFDPGMVPPFGSKEFVSKHDISTLSTHAEIAYKLLNDYGAEVAGSATAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 5e-46 45
unnamed CAD33727.1 putative F17-like fimbrial chaperone Virulence PAI I 536 Protein 1e-39 41
cupD2 AAP84170.1 putative pili assembly chaperone Not tested PAPI-1 Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
staB YP_336756.1 chaperone protein EcpD VFG0007 Protein 1e-38 44
staB YP_336756.1 chaperone protein EcpD VFG1145 Protein 3e-35 42
staB YP_336756.1 chaperone protein EcpD VFG1468 Protein 8e-40 41