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Name : pilB (BURPS1710b_3527) Accession : YP_334897.1 Strain : Genome accession: NC_007434 Putative virulence/resistance : Virulence Product : type IV fimbrial biogenesis protein,PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3843039 - 3844298 bp Length : 1260 bp Strand : + Note : identified by match to protein family HMM PF00437 DNA sequence : ATGTCCGCAACGCCCTCCAACCCTTCTTTCCCCGCCGTGCGGTCCGCAGCATCCGCGCTGCCCCGGCCGCGCGCGCCCGA GCTCGCCGACGACGCACCCGCGGTCGGTATCGTCGCCGACATGCTGCGCGCGGCCCACGAGCGCGATGCTTCCGACATCC ATGTCGAGCCCGGTGAATCCGGCTGGCGCGTGCGTCTGCGCATCGACGGCGTGCTGCACGAGTTCGCGCGGCCGCCCGCT CATTTGCGCGACGCATGCGTGACGCGCATCAAGGTACTCGCGCGGATGGACATCGCCGAGCGCCGCGTGCCGCAGGACGG CCGGCTGCGGCTCCCGCTCGCGCCGGGGCGCGCGGGCGACTACCGCGTGAGCTCGCTGCCGACGCTGCATGGCGAGAAAC TCGTGCTGCGGCGTCTGGAGACGCTGCCCGCCGATCTGTCGCTCGCCGCGCTCGGCTTCGACGCGGCTCAGGCACGCGGC GTCGAGGCGGCGATCGGCGCGCCGCACGGTCTCATCCTCGTCACGGGGCCGACGGGCAGCGGCAAGACGCTGTCACTGTA TTGCTTCCTGCAAATGCTGAACGACGTGTCGCGCAACGTCTGCACGGTCGAGGATCCGGCCGAGATCGAGCTCGACGGCA TCAACCAGGTCGGCGTGCGCGAGAAGGCGGGCCTCACCTTCGCGGTCGCGCTGCGCGCGTTCCTGCGGCAGGATCCCGAC GTCATCATGGTCGGCGAGATACGCGATGCGCAGACCGCCGACGTCGCGCTGAAAGCCGCGCAGACCGGGCACCTCGTGCT GTCGACGCTGCACACGAATGACGCGCCCGCCGCGGTGGCCCGCCTGCTCGACATCGGCGTCGCGCCGTACAACCTCGCCG CCGCGCTGCGGCTCGTGACAGCGCAGCGGCTCGTGCGACGCCTGTGCCCCGCTTGCCGCGCGCCGTCGGACGCGCCGCCC GCCACACTGCGCGCCGCGGGATTCGACGCCGCGTCGATCGACGCCGGCTGGCGCCCGTATGCCGCGAACGGATGCGCCGC ATGCCATGGAATCGGTTATCGGGGGCGCATCGGCATCCATCAGGTGATGCCGCTGTCCGCCGAGTTGCGCAATCTGACCG TCGCGCGCGCGAGCAGCGCCGAACTCGCGCGACAAGCGCGCGCCGAAGGCATGGCGAGCCTGCGCGATGCGGCACTCGCC CGCGTTCGCGACGGCACGACGAGCTTGAGCGAAGCGCTCGCCACGACGGAGGCGGCATGA Protein sequence : MSATPSNPSFPAVRSAASALPRPRAPELADDAPAVGIVADMLRAAHERDASDIHVEPGESGWRVRLRIDGVLHEFARPPA HLRDACVTRIKVLARMDIAERRVPQDGRLRLPLAPGRAGDYRVSSLPTLHGEKLVLRRLETLPADLSLAALGFDAAQARG VEAAIGAPHGLILVTGPTGSGKTLSLYCFLQMLNDVSRNVCTVEDPAEIELDGINQVGVREKAGLTFAVALRAFLRQDPD VIMVGEIRDAQTADVALKAAQTGHLVLSTLHTNDAPAAVARLLDIGVAPYNLAAALRLVTAQRLVRRLCPACRAPSDAPP ATLRAAGFDAASIDAGWRPYAANGCAACHGIGYRGRIGIHQVMPLSAELRNLTVARASSAELARQARAEGMASLRDAALA RVRDGTTSLSEALATTEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 49 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-72 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_334897.1 | type IV fimbrial biogenesis protein,PilB | VFG2426 | Protein | 5e-173 | 99 |
| pilB | YP_334897.1 | type IV fimbrial biogenesis protein,PilB | VFG0233 | Protein | 3e-89 | 50 |
| pilB | YP_334897.1 | type IV fimbrial biogenesis protein,PilB | VFG2048 | Protein | 5e-73 | 49 |
| pilB | YP_334897.1 | type IV fimbrial biogenesis protein,PilB | VFG0182 | Protein | 1e-70 | 48 |
| pilB | YP_334897.1 | type IV fimbrial biogenesis protein,PilB | VFG1876 | Protein | 1e-66 | 44 |
