|
Name : gabD (BURPS1710b_2207) Accession : YP_333602.1 Strain : Genome accession: NC_007434 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2464674 - 2466116 bp Length : 1443 bp Strand : - Note : identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : TTGAAGGACCCCTCGCTGTTGAGGCATCAAGCGTATATCGGCGGTGAATGGCAAGCCGCGGATTCTGACGCCACGTTCGA AGTCTTCGACCCGGCAACGGGAGAATCCCTTGGTACCGTGCCGAAAATGGGGGCGGCGGAAACGGCGCGTGCCATCGAGG CGGCTCAAGCCGCGTGGGCCGGCTGGCGCATGAAGACGGCGAAAGAGCGCGCGGCCATCCTGCGTCGCTGGTTCGACCTG GTGATCGCGAACAGCGACGATCTCGCGCTGATTCTCACCACTGAGCAGGGCAAGCCGCTCGCGGAAGCCAAGGGCGAGAT CGCTTACGCAGCCTCGTTCATCGAATGGTTTGCCGAAGAAGGCAAGCGCGTCGCCGGGGATACGCTTCCCACACCTGACG CGAACAAGCGGATCGTCGTCGTCAAGGAGCCGATCGGTGTCTGCGCTGCCATCACACCGTGGAATTTCCCCGCCGCCATG ATTGCGCGGAAGGTAGGGCCGGCCCTCGCTGCCGGTTGTCCGATCGTCGTCAAGCCCGCCGAGTCGACTCCGTTCTCCGC GCTTGCCATGGCGTTTTTGGCTGAACGTGCAGGCGTTCCGAAAGGCGTGCTAAGTGTCGTCATCGGCGACCCGAAAGCGA TCGGCACCGAGATAACGAGCAATCCCATCGTCCGAAAGCTGTCGTTCACGGGATCCACGGCGGTCGGCCGATTGTTGATG GCTCAGAGCGCCCCGACGGTGAAGAAACTCACGCTCGAGTTGGGCGGAAATGCTCCATTCATTGTCTTCGACGATGCCGA TCTCGATGCAGCCGTCGAAGGCGCCATCGCATCGAAATACCGCAACAACGGGCAAACGTGCGTCTGTACCAACCGCTTTT TCGTACACGAGCGTGTCTACGATGCGTTCGCGGACAAGCTCGCGGCGGCCGTGAGCAAGCTCAAGGTCGGACGCGGAACC GAGAGCGGAGCGACGCTCGGGCCGCTGATCAACGAGGCGGCGGTGAAGAAGGTGGAATCGCACATTGCCGATGCGCTTGC TAAAGGCGCCTCGCTCATGACGGGCGGCAAGCGGCACGCATTGGGGCACGGTTTTTTCGAACCGACGGTATTGACCGGCG TGAAGCCGGATATGGATGTGGCGAAAGAGGAGACGTTCGGCCCGCTCGCACCGTTGTTCCGGTTTGCGTCGGAGGAAGAA TTGGTGCGCCTTGCCAACGATACGGAGTTCGGCCTTGCCGCTTATTTATACAGCCGCGATATCGGTCGAGTTTGGCGCGT TGCCGAGGCCCTCGAATACGGCATGGTCGGGATCAATACGGGGCTCATTTCAAACGAAGTCGCGCCGTTCGGCGGTGTCA AGCAATCTGGGCTAGGCCGAGAAGGATCGCATTACGGTATCGACGACTATGTCGTGATCAAGTATTTGTGCGTCGCTGTT TGA Protein sequence : MKDPSLLRHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDL VIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDTLPTPDANKRIVVVKEPIGVCAAITPWNFPAAM IARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLM AQSAPTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGT ESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEE LVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCVAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 9e-149 | 67 |
