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Name : lcrD (CTA_0095) Accession : YP_327889.1 Strain : Chlamydia trachomatis A/HAR-13 Genome accession: NC_007429 Putative virulence/resistance : Virulence Product : low calcium response protein D Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 104050 - 106176 bp Length : 2127 bp Strand : - Note : type III secretion inner membrane protein SCTV DNA sequence : ATGAACAAGCTACTCAACTTTGTCAGTAGAACATTCGGGGGAGATGCGGCCCTGAATATGATAAACAAGTCCAGTGACCT GATCCTCGCCATGTGGATGTTAGGCGTGGTCTTGATGATCATTTTGCCATTGCCTCCAGCTATGGTGGACTTTATGATCA CCATTAACTTGGCGATCTCTGTGTTCCTGCTGATGGTTGCCTTGTATATTCCCAGCGCATTACAACTTTCTGTTTTCCCC TCCTTACTCTTAATCACCACAATGTTCCGATTGGGGATTAACATTTCTTCCTCCCGACAAATTCTCCTTCATGCTTATGC TGGTCACGTGATCCAAGCCTTCGGAGACTTCGTCGTTGGAGGAAACTATGTCGTTGGATTTATTATCTTCCTAATCATCA CCATCATTCAGTTTATCGTGGTAACAAAAGGTGCGGAGAGGGTCGCTGAGGTAGCTGCTCGATTCCGATTAGATGCCATG CCTGGTAAACAGATGGCCATCGATGCCGACCTACGAGCAGGAATGATTGATGCGACACAAGCTCGTGATAAGCGATCTCA GATTCAGAAAGAAAGTGAACTTTATGGAGCTATGGACGGAGCCATGAAGTTCATTAAGGGAGACGTGATCGCAGGGATTG TTATCTCCTTGATTAACATCGTAGGAGGATTAGTCATCGGAGTGACCATGAAGGGCATGACGATGGCTCAAGCCGCGCAC ATCTACACGTTGATTACGATCGGTGACGGGTTAGTTTCTCAAATCCCCTCTCTGTTAATCTCTTTAACAGCTGGTATCGT AACCACTCGAGTATCTAGTGATAAAGACACTAACCTTGGTAAGGAAATTTCTAGCCAGTTGGTTAAAGAACCTCGGGCAC TTCTCCTATCCGCAGGCGCAACCTTAGGAATCGGATTCTTCAAAGGTTTCCCTTTATGGTCATTTGCTTTAATGGCCGTT CTCTTTGCAGTATTAGGTATTCTGTTAATCACTAAGAAAAACTCTCCAGGGAAAAAAGGCGGAGCCAGCTCTACTACTAC AGTAGGTGCCGCTGATGGAGCTGCGGCTTCAGGAGAAAATTCTGATGATTATGCTCTGACTCTTCCTGTAATTCTTGAAC TTGGAAAAGATCTTTCTAAACTCATCCAACAACGAACCAAATCGGGGCAAAGTTTTGTGGATGATATGATTCCTAAAATG CGTCAGGCTCTCTATCAGGATATTGGAATTCGTTATCCAGGAATCCATGTACGTACAGACTCCCCTTCCTTGGAAGGTAA TGACTATATGATTCTGCTGAATGAGGTTCCCTACGTTCGCGGAAAAATTCCACCAAATCATGTGTTAACAAATGAAGTAG AAGAAAACTTATCTCGGTATAACTTACCTTTTATTACTTACAAAAATGCTGCAGGATTGCCTTCCACTTGGGTTAGTACA GATGCTCTCACTATCTTAGAGAAAGCTGCGATTAAATACTGGTCTCCTTTGGAAGTGATTATTCTTCACTTGTCCTACTT CTTCCATAGAAATTCTCAAGAGTTCTTAGGCATTCAGGAAGTACGCTCTATGATTGAATTTATGGAACGTTCCTTCCCTG ATCTTGTTAAAGAGGTTACCCGTCTTATTCCTCTACAGAAGCTTACAGAAATCTTTAAGCGTTTAGTTCAAGAACAAATA TCCATTAAGGATTTACGAACTATTTTGGAATCTTTGAGCGAATGGGCACAGACGGAAAAAGATACAGTATTACTTACTGA ATATGTGCGCTCTTCCTTGAAACTCTATATCAGCTTCAAGTTCTCTCAAGGGCAATCCGCTATTTCTGTATATCTGCTCG ATCCTGAAATTGAAGAGATGATCCGCGGAGCAATCAAACAAACTTCTGCAGGATCTTATTTGGCTTTAGATCCAGATTCT GTAAACCTCATCTTAAAATCTATGCGGATGACTATTACTCCTACACCTCCTGGAGGACAGCCTCCTGTGCTGTTGACAGC AATTGATGTCAGACGCTATGTACGGAAATTGATAGAGACAGAATTCCCTGATATCGCTGTGATTTCTTACCAAGAAGTTT TACCTGAAATTAGAATCCAGCCTTTGGGAAGAATTCAAATTTTCTAA Protein sequence : MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFP SLLLITTMFRLGINISSSRQILLHAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLVIGVTMKGMTMAQAAH IYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKDTNLGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAV LFAVLGILLITKKNSPGKKGGASSTTTVGAADGAAASGENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIPKM RQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKIPPNHVLTNEVEENLSRYNLPFITYKNAAGLPSTWVST DALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQI SIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPDS VNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIRIQPLGRIQIF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-140 | 46 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 9e-96 | 42 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-95 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 9e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lcrD | YP_327889.1 | low calcium response protein D | VFG2126 | Protein | 0.0 | 100 |
| lcrD | YP_327889.1 | low calcium response protein D | VFG0384 | Protein | 7e-140 | 46 |
| lcrD | YP_327889.1 | low calcium response protein D | VFG0064 | Protein | 1e-143 | 46 |
| lcrD | YP_327889.1 | low calcium response protein D | VFG0198 | Protein | 1e-129 | 46 |
